Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNI24_RS02530 Genome accession   NZ_CP182355
Coordinates   492689..493720 (-) Length   343 a.a.
NCBI ID   WP_417328398.1    Uniprot ID   -
Organism   MAG: Halarcobacter sp. isolate PCE-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 487689..498720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNI24_RS02500 (ACNI24_02500) - 487759..488277 (+) 519 WP_129084269.1 metallophosphoesterase family protein -
  ACNI24_RS02505 (ACNI24_02505) - 488264..489124 (+) 861 WP_129084270.1 biotin synthase -
  ACNI24_RS02510 (ACNI24_02510) - 489137..490303 (+) 1167 WP_417325603.1 cation:proton antiporter -
  ACNI24_RS02515 (ACNI24_02515) - 490313..491017 (-) 705 WP_419774436.1 hypothetical protein -
  ACNI24_RS02520 (ACNI24_02520) - 491014..491256 (-) 243 WP_129084273.1 septum formation initiator -
  ACNI24_RS02525 (ACNI24_02525) eno 491260..492537 (-) 1278 WP_129084274.1 phosphopyruvate hydratase -
  ACNI24_RS02530 (ACNI24_02530) recA 492689..493720 (-) 1032 WP_417328398.1 recombinase RecA Machinery gene
  ACNI24_RS02535 (ACNI24_02535) pseB 493891..494877 (+) 987 WP_419774437.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ACNI24_RS02540 (ACNI24_02540) - 494877..495752 (+) 876 WP_419774438.1 SDR family oxidoreductase -
  ACNI24_RS02545 (ACNI24_02545) - 495749..496825 (+) 1077 WP_417325597.1 N-acetylneuraminate synthase family protein -
  ACNI24_RS02550 (ACNI24_02550) - 496818..497348 (+) 531 WP_417325595.1 GNAT family N-acetyltransferase -
  ACNI24_RS02555 (ACNI24_02555) - 497335..498240 (+) 906 WP_419774439.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37100.53 Da        Isoelectric Point: 4.7965

>NTDB_id=1101358 ACNI24_RS02530 WP_417328398.1 492689..493720(-) (recA) [MAG: Halarcobacter sp. isolate PCE-3]
MDENQKKSLDLAIKQIDKTFGKGTLIRLGDKEVVPTEAISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
ECQKAGGVCAFIDAEHALDTVYARNLGVDIDNLLVSQPDYGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITGLLNKMHCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQAENSIGN
RVKVKVVKNKVAPPFKQAEFDIMFGEGISKTGELIDYGVKLDIVDKAGAWFSYDNTKIGQGKENSKVFLKDNPEIANEIE
GKILTAMGVNDEIIQGEVEQEED

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1101358 ACNI24_RS02530 WP_417328398.1 492689..493720(-) (recA) [MAG: Halarcobacter sp. isolate PCE-3]
ATGGATGAAAATCAAAAAAAATCACTTGATTTAGCAATTAAACAAATTGACAAAACATTTGGTAAAGGTACACTAATTAG
ACTTGGGGACAAAGAAGTAGTTCCAACTGAAGCTATCTCTACAGGTTCTTTAGGACTAGACTTAGCGTTAGGTGTAGGAG
GACTTCCAAAAGGTAGAGTTATTGAAATTTATGGACCTGAATCTTCAGGTAAAACAACTCTTACTCTTCACGCAATTGCA
GAGTGCCAAAAAGCAGGTGGAGTTTGTGCCTTTATTGATGCAGAACACGCTTTAGATACTGTTTATGCAAGAAATCTTGG
GGTTGATATTGATAACTTACTTGTTTCTCAACCTGATTATGGTGAGCAAGCTTTAGAAATCTTAGAGACAGTTATTAGAT
CTGGTGCTGTTGATTTAGTAGTAGTTGACTCAGTTGCTGCACTTACTCCAAAAGTAGAAATTGATGGAGATATGGATGAC
CAACAAGTTGGTGTTCAAGCAAGACTTATGTCAAAAGCTTTAAGAAAAATTACTGGTTTACTAAATAAAATGCACTGTAC
GGTAATCTTTATTAACCAAATCAGAATGAAAATTGGTATGACAGGTTATGGAAGCCCAGAAACAACTACTGGTGGAAACG
CACTTAAATTCTACTCTTCAGTTAGACTAGATATTAGAAGAATTGCGACACTTAAACAAGCAGAAAACTCAATTGGAAAC
AGAGTAAAAGTTAAAGTTGTTAAAAATAAAGTTGCACCTCCATTTAAACAAGCAGAGTTTGATATTATGTTTGGAGAAGG
TATCTCTAAAACAGGTGAACTTATTGACTATGGTGTAAAACTTGATATTGTTGATAAAGCAGGAGCTTGGTTCTCTTATG
ACAATACAAAAATTGGGCAAGGTAAAGAAAACTCAAAAGTATTCTTAAAAGACAACCCAGAAATTGCAAATGAAATTGAA
GGTAAGATTCTTACTGCAATGGGTGTAAACGATGAAATCATTCAAGGTGAAGTAGAGCAAGAAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

74.927

100

0.749
  recA Helicobacter pylori strain NCTC11637

76.048

97.376

0.741
  recA Helicobacter pylori 26695

75.749

97.376

0.738
  recA Acinetobacter baumannii D1279779

65.318

100

0.659
  recA Acinetobacter baylyi ADP1

64.162

100

0.647
  recA Neisseria gonorrhoeae MS11

64.688

98.251

0.636
  recA Neisseria gonorrhoeae MS11

64.688

98.251

0.636
  recA Neisseria gonorrhoeae strain FA1090

64.688

98.251

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.244

95.627

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.09

97.668

0.606
  recA Vibrio cholerae strain A1552

62.09

97.668

0.606
  recA Glaesserella parasuis strain SC1401

62.805

95.627

0.601
  recA Pseudomonas stutzeri DSM 10701

63.467

94.169

0.598
  recA Streptococcus mutans UA159

57.88

100

0.589
  recA Ralstonia pseudosolanacearum GMI1000

64.127

91.837

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

61.28

95.627

0.586
  recA Streptococcus pneumoniae D39

58.017

100

0.58
  recA Streptococcus pneumoniae Rx1

58.017

100

0.58
  recA Streptococcus pneumoniae R6

58.017

100

0.58
  recA Streptococcus pneumoniae TIGR4

58.017

100

0.58
  recA Streptococcus mitis NCTC 12261

59.215

96.501

0.571
  recA Streptococcus pyogenes NZ131

59.394

96.21

0.571
  recA Streptococcus mitis SK321

58.912

96.501

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.182

96.21

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

57.879

96.21

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

95.044

0.534

Multiple sequence alignment