Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACNI3D_RS15920 Genome accession   NZ_CP182343
Coordinates   3118332..3119372 (+) Length   346 a.a.
NCBI ID   WP_419767673.1    Uniprot ID   -
Organism   MAG: Arcobacter sp. isolate Pygsuia-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3113332..3124372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNI3D_RS15900 (ACNI3D_15900) gmd 3114364..3115485 (-) 1122 WP_419767669.1 GDP-mannose 4,6-dehydratase -
  ACNI3D_RS15905 (ACNI3D_15905) - 3115505..3116923 (-) 1419 WP_419767670.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  ACNI3D_RS15910 (ACNI3D_15910) pseB 3116935..3117927 (-) 993 WP_419767671.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ACNI3D_RS15915 (ACNI3D_15915) - 3118032..3118244 (+) 213 WP_419767672.1 hypothetical protein -
  ACNI3D_RS15920 (ACNI3D_15920) recA 3118332..3119372 (+) 1041 WP_419767673.1 recombinase RecA Machinery gene
  ACNI3D_RS15925 (ACNI3D_15925) eno 3119524..3120801 (+) 1278 WP_419767674.1 phosphopyruvate hydratase -
  ACNI3D_RS15930 (ACNI3D_15930) - 3120814..3121071 (+) 258 WP_129100856.1 septum formation initiator -
  ACNI3D_RS15935 (ACNI3D_15935) - 3121068..3121877 (+) 810 WP_419767675.1 AMIN domain-containing protein -
  ACNI3D_RS15940 (ACNI3D_15940) - 3121851..3123008 (-) 1158 WP_129100854.1 cation:proton antiporter -
  ACNI3D_RS15945 (ACNI3D_15945) - 3123022..3123873 (-) 852 WP_419767676.1 biotin synthase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37408.75 Da        Isoelectric Point: 4.6889

>NTDB_id=1101286 ACNI3D_RS15920 WP_419767673.1 3118332..3119372(+) (recA) [MAG: Arcobacter sp. isolate Pygsuia-1]
MDDNQKKSLDLAIKQIDKAFGKGSLVRLGDKETVPVESISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
ECQRQGGVCAFIDAEHALDVVYAKNLGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLIVIDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKITGILHKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSIRLDIRRIATLKQAENSIGN
RVKVKVVKNKVAPPFKQAEFDIMFGEGISKMGELVDYGVKLDIVDKAGAWFSYNDSKIGQGKENSKVFLRDNPEIAKEIE
DKILEAMGVNDAVPFDGDESSEEGED

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1101286 ACNI3D_RS15920 WP_419767673.1 3118332..3119372(+) (recA) [MAG: Arcobacter sp. isolate Pygsuia-1]
ATGGATGATAATCAAAAAAAATCACTAGACTTAGCAATCAAACAAATTGACAAAGCTTTCGGAAAAGGTTCACTAGTAAG
ATTAGGGGATAAAGAAACAGTTCCAGTTGAGTCTATAAGTACAGGTTCATTGGGACTTGACTTAGCATTAGGGGTTGGAG
GGTTACCAAAGGGAAGAGTAATAGAAATATATGGACCTGAATCTTCAGGTAAAACTACACTTACTCTTCATGCAATAGCA
GAATGTCAAAGACAAGGTGGAGTTTGTGCTTTTATTGATGCAGAACATGCACTTGATGTAGTTTATGCAAAAAATTTAGG
AGTAGACACTGATAACTTACTTGTTTCTCAACCAGATTTTGGAGAACAAGCTTTAGAGATACTAGAAACTGTTATTAGAA
GTGGGGCTGTTGATTTAATAGTAATTGACTCTGTTGCAGCACTTACTCCAAAAGTAGAGATTGATGGTGATATGGATGAC
CAACAAGTAGGTGTTCAAGCAAGACTTATGAGTAAAGCTTTAAGAAAAATTACTGGTATTTTACATAAAATGAACTGTAC
TGTAATCTTTATCAACCAAATCAGAATGAAAATTGGAATGACAGGATATGGAAGTCCAGAAACTACAACTGGTGGAAATG
CACTTAAATTTTACTCTTCTATTAGACTTGATATTAGAAGAATAGCAACACTTAAACAAGCTGAAAATTCTATTGGAAAT
AGAGTAAAAGTAAAAGTTGTAAAAAATAAAGTTGCACCTCCTTTCAAACAAGCAGAGTTTGATATTATGTTTGGAGAAGG
TATCTCAAAAATGGGAGAACTTGTTGATTATGGTGTTAAACTTGATATTGTTGATAAAGCTGGAGCTTGGTTTAGCTACA
ATGACAGTAAAATCGGTCAAGGAAAAGAGAACTCAAAAGTATTCTTAAGAGATAATCCTGAAATAGCAAAAGAGATTGAA
GATAAAATTCTTGAAGCTATGGGAGTAAATGATGCTGTACCATTTGATGGCGATGAAAGTTCAGAAGAAGGTGAAGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.51

99.133

0.749
  recA Helicobacter pylori 26695

74.493

99.711

0.743
  recA Helicobacter pylori strain NCTC11637

74.203

99.711

0.74
  recA Acinetobacter baumannii D1279779

64.035

98.844

0.633
  recA Neisseria gonorrhoeae MS11

62.139

100

0.621
  recA Neisseria gonorrhoeae MS11

62.139

100

0.621
  recA Neisseria gonorrhoeae strain FA1090

62.139

100

0.621
  recA Acinetobacter baylyi ADP1

65.443

94.509

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.063

96.243

0.607
  recA Pseudomonas stutzeri DSM 10701

62.651

95.954

0.601
  recA Ralstonia pseudosolanacearum GMI1000

65.714

91.04

0.598
  recA Vibrio cholerae strain A1552

62.997

94.509

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.997

94.509

0.595
  recA Glaesserella parasuis strain SC1401

62.195

94.798

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

60.423

95.665

0.578
  recA Streptococcus mutans UA159

56.772

100

0.569
  recA Streptococcus mitis NCTC 12261

56.647

100

0.566
  recA Streptococcus pneumoniae D39

56.851

99.133

0.564
  recA Streptococcus pneumoniae Rx1

56.851

99.133

0.564
  recA Streptococcus pneumoniae R6

56.851

99.133

0.564
  recA Streptococcus pneumoniae TIGR4

56.851

99.133

0.564
  recA Streptococcus mitis SK321

56.358

100

0.564
  recA Streptococcus pyogenes NZ131

59.077

93.931

0.555
  recA Lactococcus lactis subsp. cremoris KW2

57.751

95.087

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

56.928

95.954

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.099

93.642

0.535

Multiple sequence alignment