Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACM1PF_RS04680 Genome accession   NZ_CP182236
Coordinates   987817..988890 (-) Length   357 a.a.
NCBI ID   WP_416672652.1    Uniprot ID   -
Organism   Egbenema sp. FJBBOT/2019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 982817..993890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1PF_RS04660 (ACM1PF_04660) priA 983207..985821 (+) 2615 Protein_918 primosomal protein N' -
  ACM1PF_RS04665 (ACM1PF_04665) - 985971..986462 (-) 492 WP_416672649.1 ferredoxin -
  ACM1PF_RS04670 (ACM1PF_04670) - 986655..987041 (-) 387 WP_416672650.1 DUF1257 domain-containing protein -
  ACM1PF_RS04675 (ACM1PF_04675) - 987096..987305 (-) 210 WP_416676564.1 DUF2997 domain-containing protein -
  ACM1PF_RS04680 (ACM1PF_04680) recA 987817..988890 (-) 1074 WP_416672652.1 recombinase RecA Machinery gene
  ACM1PF_RS04685 (ACM1PF_04685) xseA 989258..990528 (+) 1271 Protein_923 exodeoxyribonuclease VII large subunit -
  ACM1PF_RS04690 (ACM1PF_04690) xseB 990636..990848 (+) 213 WP_416676565.1 exodeoxyribonuclease VII small subunit -
  ACM1PF_RS04695 (ACM1PF_04695) - 990945..991544 (-) 600 WP_416672654.1 superoxide dismutase -
  ACM1PF_RS04700 (ACM1PF_04700) - 991997..993106 (-) 1110 WP_416672656.1 vanadium-dependent haloperoxidase -
  ACM1PF_RS04705 (ACM1PF_04705) - 993061..993426 (-) 366 WP_416672658.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38274.51 Da        Isoelectric Point: 4.8307

>NTDB_id=1100947 ACM1PF_RS04680 WP_416672652.1 987817..988890(-) (recA) [Egbenema sp. FJBBOT/2019]
MAKTSNENSEREKALNLVLTQIDRSFGKGTIMRLGDASRMKVETISSGALTLDLALGGGIPKGRVIEIYGPESSGKTTLA
LHAIAEVQKAGGVAAFVDAEHALDPSYAGALGVDIANLLVSQPDTGEAALEIVDQLVRSTAIDLVVVDSVAALVPRAEIE
GEMGDTHVGLQARLMSQALRKITGNIGKTGCSVIFLNQLRQKIGVTYGNPETTTGGNALKFYASLRLDIRRIQTLKKGNE
EYGIRAKVKVAKNKVAPPFRIAEFDVIFGKGISTLGCLIDLAEETGVVTRRGAWYSYNGENISQGRDNAIKYLEENPNVA
KEVEKLVREKLEMGAVVSANSVAPFEEEEDDELDEAD

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1100947 ACM1PF_RS04680 WP_416672652.1 987817..988890(-) (recA) [Egbenema sp. FJBBOT/2019]
ATGGCTAAGACCAGTAATGAGAACTCGGAACGCGAGAAGGCCCTGAATCTGGTGTTGACCCAGATTGACCGCTCTTTTGG
CAAGGGCACGATTATGCGTCTGGGAGATGCATCCCGGATGAAGGTAGAAACCATCTCAAGTGGCGCATTGACGCTTGATT
TGGCCCTGGGCGGCGGCATTCCGAAGGGACGAGTCATTGAAATTTATGGCCCAGAAAGTTCGGGGAAAACCACCCTGGCC
CTCCATGCGATCGCAGAAGTGCAAAAGGCGGGAGGCGTTGCTGCATTCGTAGATGCGGAACACGCCCTTGACCCGTCCTA
TGCCGGAGCCCTGGGGGTTGATATTGCCAATCTCCTGGTTTCCCAACCGGATACGGGAGAAGCGGCCCTGGAAATTGTCG
ATCAACTCGTGCGATCGACGGCGATCGATCTAGTCGTGGTGGACTCAGTTGCCGCCCTGGTTCCCAGAGCAGAAATTGAA
GGAGAAATGGGCGATACCCATGTGGGCTTACAGGCCCGCTTGATGAGCCAGGCTCTGCGGAAAATCACCGGAAATATTGG
GAAAACCGGCTGTAGCGTAATTTTTCTCAACCAGCTTCGCCAAAAAATCGGTGTTACCTACGGGAATCCTGAAACAACCA
CAGGCGGTAATGCCCTGAAGTTTTATGCCTCCCTCCGGCTCGATATTCGTCGAATCCAAACCTTAAAGAAAGGAAATGAA
GAATACGGTATTCGCGCCAAGGTCAAGGTAGCCAAAAACAAGGTCGCTCCCCCCTTCCGCATCGCTGAGTTTGATGTCAT
TTTTGGCAAGGGCATTTCCACCCTGGGCTGTTTGATCGACCTGGCCGAGGAAACGGGAGTCGTCACTCGGCGCGGAGCCT
GGTACAGCTACAACGGTGAGAATATCAGTCAGGGTCGAGATAATGCGATCAAGTACCTGGAGGAGAACCCGAACGTCGCC
AAAGAAGTGGAAAAATTGGTGCGGGAAAAACTGGAAATGGGAGCAGTGGTGTCTGCCAATTCTGTCGCCCCCTTTGAGGA
AGAAGAGGACGATGAACTGGACGAAGCAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.429

98.039

0.622
  recA Pseudomonas stutzeri DSM 10701

62.931

97.479

0.613
  recA Ralstonia pseudosolanacearum GMI1000

63.081

96.359

0.608
  recA Acinetobacter baumannii D1279779

63.081

96.359

0.608
  recA Helicobacter pylori 26695

58.739

97.759

0.574
  recA Helicobacter pylori strain NCTC11637

58.739

97.759

0.574
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.571

98.039

0.574
  recA Neisseria gonorrhoeae MS11

62.229

90.476

0.563
  recA Neisseria gonorrhoeae MS11

62.229

90.476

0.563
  recA Neisseria gonorrhoeae strain FA1090

62.229

90.476

0.563
  recA Glaesserella parasuis strain SC1401

57.102

98.599

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.065

95.518

0.555
  recA Vibrio cholerae strain A1552

60.923

91.036

0.555
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

91.036

0.555
  recA Streptococcus pyogenes NZ131

55.493

99.44

0.552
  recA Bacillus subtilis subsp. subtilis str. 168

61.18

90.196

0.552
  recA Streptococcus pneumoniae R6

59.756

91.877

0.549
  recA Streptococcus pneumoniae TIGR4

59.756

91.877

0.549
  recA Streptococcus pneumoniae Rx1

59.756

91.877

0.549
  recA Streptococcus pneumoniae D39

59.756

91.877

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

60.938

89.636

0.546
  recA Streptococcus mitis SK321

60

91.036

0.546
  recA Streptococcus mitis NCTC 12261

59.692

91.036

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.958

93.277

0.541
  recA Streptococcus mutans UA159

58.182

92.437

0.538
  recA Lactococcus lactis subsp. cremoris KW2

57.576

92.437

0.532

Multiple sequence alignment