Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLWOT_RS01310 Genome accession   NZ_CP181368
Coordinates   265780..266958 (+) Length   392 a.a.
NCBI ID   WP_416453076.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii strain 28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 260780..271958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLWOT_RS01290 (ACLWOT_01290) - 261400..262104 (+) 705 WP_005921816.1 response regulator transcription factor -
  ACLWOT_RS01295 (ACLWOT_01295) - 262195..263619 (+) 1425 WP_117553725.1 sensor histidine kinase -
  ACLWOT_RS01300 (ACLWOT_01300) - 263751..264698 (+) 948 WP_416453074.1 DUF1385 domain-containing protein -
  ACLWOT_RS01305 (ACLWOT_01305) - 264692..265663 (+) 972 WP_416453075.1 N5-glutamine methyltransferase family protein -
  ACLWOT_RS01310 (ACLWOT_01310) recA 265780..266958 (+) 1179 WP_416453076.1 recombinase RecA Machinery gene
  ACLWOT_RS01315 (ACLWOT_01315) - 266959..267465 (+) 507 WP_112120977.1 regulatory protein RecX -
  ACLWOT_RS01320 (ACLWOT_01320) rimO 267522..268847 (+) 1326 WP_015537255.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACLWOT_RS01325 (ACLWOT_01325) pgsA 268868..269467 (+) 600 WP_117526642.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLWOT_RS01330 (ACLWOT_01330) - 270120..271283 (-) 1164 WP_416453077.1 trigger factor -
  ACLWOT_RS01335 (ACLWOT_01335) - 271360..271497 (+) 138 WP_416453078.1 hypothetical protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 41812.69 Da        Isoelectric Point: 5.5718

>NTDB_id=1099857 ACLWOT_RS01310 WP_416453076.1 265780..266958(+) (recA) [Faecalibacterium prausnitzii strain 28]
MAKNQNNNVAPATQKTEPEAKKDALATALAQIEKQFGKGAVMKLGDNASMQVDAISTGSLGLDLALGVGGVPRGRIIEVY
GPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGEQAMEICEALVRSGAIDAIVVDS
VAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIGKTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDI
RRVEGLKDSSGQFIGNHTRAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGRDN
AKQFLKDNPEIANDIEGQIRANADKLYATRRPAGRAAAAAVEKPADPAAAKEPVVKAPTRSSESELDIMVED

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1099857 ACLWOT_RS01310 WP_416453076.1 265780..266958(+) (recA) [Faecalibacterium prausnitzii strain 28]
ATGGCAAAAAATCAGAACAACAACGTTGCACCGGCCACCCAAAAGACCGAGCCGGAAGCCAAGAAGGACGCGCTGGCTAC
GGCGCTGGCGCAGATCGAAAAGCAGTTCGGCAAGGGTGCCGTCATGAAGCTGGGCGACAACGCCTCCATGCAGGTGGATG
CCATCTCTACTGGCAGTCTGGGGCTGGATCTGGCGCTGGGCGTGGGCGGTGTGCCGCGCGGCCGCATCATCGAGGTGTAC
GGCCCGGAATCCAGCGGTAAGACCACGCTGGCACTGCACATCCTTGCCGAAGCCCAGAAGAAGGGCGGCGAGGTGGCCTT
TATCGACGTTGAGCACGCACTGGACCCCACCTATGCCGAGGCGCTGGGCGTGGACATCAACAACCTGCTGGTCAGTCAGC
CGGACACCGGCGAGCAGGCCATGGAGATCTGCGAAGCGCTGGTGCGCTCCGGCGCGATTGATGCCATTGTAGTAGACTCG
GTCGCCGCCATGGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCATGTGGGCCTGCAGGCACGTCTGATGAG
TCAGGCCATGCGCAAGCTGACCAGCGTCATCGGCAAGACCAACACGGTCTGCGTGTTCATCAACCAGCTGCGCGAGAAGG
TGGGCGTCATGTACGGCAACCCGGAGGTGACCACCGGCGGCCGCGCCCTGAAGTACTACGCCTCGGTGCGTATCGACATC
CGCCGCGTGGAGGGTCTGAAGGACTCCTCCGGTCAGTTCATCGGCAACCACACCCGCGCCAAGATCGTGAAGAACAAGGT
GGCTCCGCCGTTCCGTGAGGCCGAGTTCGATATCATGTTCGGTGAGGGCATCTCCAAAATGAGCGAGCTCATCGACGTGG
GCGTCAAGCTGGGTATCGTGCAGAAGAGCGGTGCATGGTTCAACTACGGCGATATCCGTCTGGGTCAGGGCCGCGACAAC
GCCAAGCAGTTCCTGAAGGATAACCCCGAGATCGCCAATGACATCGAGGGGCAGATCCGCGCCAACGCCGATAAGCTGTA
CGCCACCCGCCGCCCGGCAGGCCGCGCCGCAGCCGCCGCAGTGGAGAAGCCCGCCGACCCCGCCGCCGCAAAGGAGCCGG
TAGTCAAGGCTCCCACCCGCAGCAGCGAGAGCGAGCTGGACATCATGGTGGAGGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

67.492

82.398

0.556
  recA Helicobacter pylori 26695

67.183

82.398

0.554
  recA Glaesserella parasuis strain SC1401

63.081

87.755

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

82.143

0.548
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

81.888

0.536
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

85.204

0.533
  recA Streptococcus pyogenes NZ131

60.058

87.5

0.526
  recA Neisseria gonorrhoeae MS11

64.174

81.888

0.526
  recA Neisseria gonorrhoeae MS11

64.174

81.888

0.526
  recA Neisseria gonorrhoeae strain FA1090

64.174

81.888

0.526
  recA Pseudomonas stutzeri DSM 10701

63.467

82.398

0.523
  recA Acinetobacter baumannii D1279779

58.453

89.031

0.52
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

82.143

0.52
  recA Vibrio cholerae strain A1552

63.354

82.143

0.52
  recA Lactococcus lactis subsp. cremoris KW2

58.721

87.755

0.515
  recA Streptococcus mutans UA159

61.92

82.398

0.51
  recA Streptococcus mitis NCTC 12261

61.92

82.398

0.51
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

81.888

0.508
  recA Streptococcus mitis SK321

61.61

82.398

0.508
  recA Acinetobacter baylyi ADP1

62.187

81.633

0.508
  recA Ralstonia pseudosolanacearum GMI1000

63.666

79.337

0.505
  recA Streptococcus pneumoniae R6

61.111

82.653

0.505
  recA Streptococcus pneumoniae Rx1

61.111

82.653

0.505
  recA Streptococcus pneumoniae D39

61.111

82.653

0.505
  recA Streptococcus pneumoniae TIGR4

61.111

82.653

0.505
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.305

86.99

0.49

Multiple sequence alignment