Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLNGM_RS14500 Genome accession   NZ_CP181348
Coordinates   3066816..3067889 (+) Length   357 a.a.
NCBI ID   WP_416355459.1    Uniprot ID   -
Organism   Aureimonas phyllosphaerae strain Leaf1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3061816..3072889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLNGM_RS14485 (ACLNGM_14485) cckA 3062254..3064770 (+) 2517 WP_416358455.1 cell cycle histidine kinase CckA -
  ACLNGM_RS14490 (ACLNGM_14490) - 3064775..3065686 (-) 912 WP_416355457.1 pseudouridine-5'-phosphate glycosidase -
  ACLNGM_RS14495 (ACLNGM_14495) - 3065699..3066667 (-) 969 WP_416355458.1 PfkB family carbohydrate kinase -
  ACLNGM_RS14500 (ACLNGM_14500) recA 3066816..3067889 (+) 1074 WP_416355459.1 recombinase RecA Machinery gene
  ACLNGM_RS14505 (ACLNGM_14505) - 3067946..3068989 (-) 1044 WP_416355460.1 zinc-dependent alcohol dehydrogenase family protein -
  ACLNGM_RS14510 (ACLNGM_14510) phnN 3069065..3069658 (-) 594 WP_416355461.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  ACLNGM_RS14515 (ACLNGM_14515) - 3069651..3070799 (-) 1149 WP_416355462.1 alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase -
  ACLNGM_RS14520 (ACLNGM_14520) - 3070796..3071473 (-) 678 WP_416355463.1 DUF1045 domain-containing protein -
  ACLNGM_RS14525 (ACLNGM_14525) phnE 3071473..3072285 (-) 813 WP_416355464.1 phosphonate ABC transporter, permease protein PhnE -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38103.50 Da        Isoelectric Point: 5.0468

>NTDB_id=1099851 ACLNGM_RS14500 WP_416355459.1 3066816..3067889(+) (recA) [Aureimonas phyllosphaerae strain Leaf1]
MAQNSLRLVEDTSVDKTKALDAALSQIERAFGKGSIMRLGATEKLDIETISTGSLGLDIALGVGGLPKGRIVEIYGPESS
GKTTLALHTVAEAQKGGGVCAFVDAEHALDPVYARKLGVDLDSLLISQPDTGEQALEIVDTLVRSGAIDVLVVDSVAALT
PRAEIEGEMGDSLPGMQARLMSQALRKLTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS
IKEREEVTGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKVGELVDLGVKSGIVEKSGAWFSYNSQRLGQGRENSKQFLR
DNSAVAAEIEAAIRQNAGLIAEQLLQNGGPDPNDDAE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1099851 ACLNGM_RS14500 WP_416355459.1 3066816..3067889(+) (recA) [Aureimonas phyllosphaerae strain Leaf1]
ATGGCCCAGAATTCACTCCGTCTCGTTGAGGATACATCGGTGGACAAAACAAAGGCGCTCGACGCAGCCCTGTCGCAGAT
CGAGCGGGCCTTCGGCAAGGGCTCGATCATGCGGCTCGGTGCCACCGAGAAGCTCGACATCGAGACGATCTCGACCGGCT
CGCTCGGACTCGACATCGCGCTCGGCGTCGGCGGTCTTCCGAAGGGTCGTATCGTCGAGATCTACGGCCCCGAGTCGTCG
GGCAAGACGACGCTGGCGCTCCACACGGTCGCAGAGGCCCAGAAGGGCGGCGGCGTCTGCGCCTTTGTCGACGCGGAACA
CGCGCTCGATCCGGTCTATGCCCGCAAGCTCGGCGTCGATCTCGACAGCCTCCTGATCTCGCAGCCGGACACGGGCGAGC
AGGCGTTGGAGATCGTCGACACGCTGGTCCGCTCCGGTGCGATCGACGTGCTCGTGGTCGATTCGGTCGCCGCGCTGACC
CCGCGCGCCGAGATCGAGGGCGAGATGGGCGACTCGTTGCCCGGCATGCAGGCTCGCCTGATGAGCCAAGCGCTGCGCAA
GCTGACGGGCTCGATCTCGCGCTCGAAGTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCTCGCCGGAGACGACGACGGGCGGCAACGCCTTGAAGTTCTACGCTTCGGTGCGCCTCGACATCCGCCGCATCGGTTCG
ATCAAGGAACGCGAAGAGGTCACGGGCAACCAGACCCGCGTGAAGGTGGTGAAGAACAAGCTCGCACCGCCGTTCAAGCA
GGTCGAGTTCGACATCATGTACGGCGAGGGCGTGTCGAAGGTCGGCGAGCTGGTCGACCTCGGTGTGAAGTCCGGGATCG
TCGAGAAATCGGGCGCCTGGTTCTCGTACAACTCCCAGCGCCTCGGTCAGGGCCGCGAGAACTCCAAGCAGTTCCTGCGC
GACAATTCGGCCGTCGCTGCCGAGATCGAGGCCGCGATCCGCCAGAACGCGGGACTGATCGCCGAGCAGCTGCTGCAGAA
CGGCGGTCCGGATCCGAACGACGACGCCGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

68.805

96.078

0.661
  recA Neisseria gonorrhoeae MS11

68.805

96.078

0.661
  recA Neisseria gonorrhoeae MS11

68.805

96.078

0.661
  recA Acinetobacter baumannii D1279779

68.862

93.557

0.644
  recA Vibrio cholerae strain A1552

68.862

93.557

0.644
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.862

93.557

0.644
  recA Acinetobacter baylyi ADP1

70.717

89.916

0.636
  recA Glaesserella parasuis strain SC1401

66.374

95.798

0.636
  recA Ralstonia pseudosolanacearum GMI1000

72.204

87.675

0.633
  recA Pseudomonas stutzeri DSM 10701

69.375

89.636

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.972

91.597

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.871

91.317

0.611
  recA Helicobacter pylori 26695

65.538

91.036

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

91.036

0.594
  recA Helicobacter pylori strain NCTC11637

65.231

91.036

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.077

91.036

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

63.077

91.036

0.574
  recA Streptococcus pneumoniae D39

55.858

100

0.574
  recA Streptococcus pneumoniae TIGR4

55.858

100

0.574
  recA Streptococcus pneumoniae R6

55.858

100

0.574
  recA Streptococcus pneumoniae Rx1

55.858

100

0.574
  recA Streptococcus mitis SK321

60.606

92.437

0.56
  recA Streptococcus mutans UA159

59.639

92.997

0.555
  recA Streptococcus mitis NCTC 12261

60

92.437

0.555
  recA Streptococcus pyogenes NZ131

59.756

91.877

0.549
  recA Lactococcus lactis subsp. cremoris KW2

59.091

92.437

0.546

Multiple sequence alignment