Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H9T68_RS23625 Genome accession   NZ_CP181346
Coordinates   5207503..5208606 (+) Length   367 a.a.
NCBI ID   WP_280190029.1    Uniprot ID   -
Organism   Delftia sp. PS-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5202503..5213606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9T68_RS23605 (H9T68_023600) - 5203568..5204560 (+) 993 WP_280190025.1 LysR substrate-binding domain-containing protein -
  H9T68_RS23610 (H9T68_023605) - 5204499..5205977 (-) 1479 WP_280190026.1 sensor histidine kinase -
  H9T68_RS23615 (H9T68_023610) - 5206091..5206765 (-) 675 WP_280190027.1 response regulator transcription factor -
  H9T68_RS23620 (H9T68_023615) - 5206865..5207356 (-) 492 WP_280190028.1 MarR family winged helix-turn-helix transcriptional regulator -
  H9T68_RS23625 (H9T68_023620) recA 5207503..5208606 (+) 1104 WP_280190029.1 recombinase RecA Machinery gene
  H9T68_RS23630 (H9T68_023625) recX 5208695..5209165 (+) 471 WP_280190030.1 recombination regulator RecX -
  H9T68_RS23635 (H9T68_023630) argC 5209208..5210140 (-) 933 WP_280190031.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  H9T68_RS23640 (H9T68_023635) sucC 5210582..5211742 (+) 1161 WP_280190032.1 ADP-forming succinate--CoA ligase subunit beta -
  H9T68_RS23645 (H9T68_023640) sucD 5211763..5212656 (+) 894 WP_280190033.1 succinate--CoA ligase subunit alpha -
  H9T68_RS23650 (H9T68_023645) - 5212821..5213513 (+) 693 WP_280190034.1 TerC family protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38904.62 Da        Isoelectric Point: 5.3744

>NTDB_id=1099819 H9T68_RS23625 WP_280190029.1 5207503..5208606(+) (recA) [Delftia sp. PS-11]
MNTAATNATTEKAKALQAALAQIEKQFGKGTIMRLGEGEAIEDLQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAEMQKLGGTCAFIDAEHALDTGYAQKLGVNLGDVLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKA
EIEGDMGDQLPGLQARLMSQALRKLTSTIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKK
GDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENR
DLAIEIENKVRSGLGISLLPTAGGEAPEAKATKPGKAKADKDGVIEG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1099819 H9T68_RS23625 WP_280190029.1 5207503..5208606(+) (recA) [Delftia sp. PS-11]
ATGAACACCGCCGCCACCAACGCCACCACTGAAAAAGCCAAGGCCCTGCAAGCCGCACTGGCCCAGATCGAGAAGCAATT
CGGCAAGGGCACCATCATGCGCCTGGGCGAAGGCGAGGCCATCGAAGACCTGCAGGTCGTCTCCACCGGCTCGCTGGGAC
TGGACATCGCACTGGGCGTCGGCGGCCTGCCGCGCGGGCGCGTCATCGAAATCTACGGCCCGGAATCCTCGGGCAAGACC
ACGCTGACCCTGCAGGTCATCGCCGAAATGCAGAAACTGGGCGGCACCTGCGCCTTCATTGACGCCGAGCACGCGCTGGA
CACCGGCTATGCGCAAAAGCTGGGCGTGAACCTTGGCGATGTGCTGATCAGCCAGCCTGATACCGGCGAGCAGGCGCTGG
AGATCGTCGACAGCCTGGTGCGCTCGGGCGCCGTGGACCTGATCGTCGTGGACTCGGTGGCCGCACTCACACCCAAGGCG
GAAATCGAAGGCGACATGGGCGACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCAG
CACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCG
AAACCACCACGGGCGGTAACGCGCTCAAGTTCTACGCCTCGGTACGCCTGGACATCCGCCGCACAGGCACCATCAAGAAG
GGGGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTCGTCAAAAACAAGGTCTCGCCCCCGTTCAAGACCGCTGAATT
CGACATCCTCTTCGGCGAGGGCATCTCGCGCGAAGGCGAAATCCTGGACATGGGTGTCAACGCCAAGATCCTCGACAAAT
CGGGTGCCTGGTACGCCTACAACGGCGAAAAGATCGGCCAGGGCCGCGACAACGCCCGCGAATTCCTGCGCGAAAACCGT
GATCTGGCCATCGAAATCGAAAACAAGGTGCGCAGCGGCCTGGGCATCTCCCTGCTGCCCACGGCCGGCGGCGAAGCGCC
CGAAGCCAAGGCCACCAAACCCGGCAAGGCCAAGGCCGACAAGGACGGCGTGATCGAAGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.081

90.736

0.736
  recA Neisseria gonorrhoeae MS11

68.786

94.278

0.649
  recA Neisseria gonorrhoeae MS11

68.786

94.278

0.649
  recA Neisseria gonorrhoeae strain FA1090

68.786

94.278

0.649
  recA Pseudomonas stutzeri DSM 10701

67.236

95.64

0.643
  recA Acinetobacter baumannii D1279779

70.898

88.011

0.624
  recA Glaesserella parasuis strain SC1401

70.679

88.283

0.624
  recA Acinetobacter baylyi ADP1

70.588

88.011

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.659

88.011

0.613
  recA Vibrio cholerae strain A1552

69.659

88.011

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.172

91.826

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.098

88.828

0.605
  recA Helicobacter pylori 26695

65.337

88.828

0.58
  recA Helicobacter pylori strain NCTC11637

65.337

88.828

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

89.101

0.572
  recA Streptococcus mutans UA159

58.333

98.093

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

62.763

90.736

0.569
  recA Streptococcus pneumoniae Rx1

58.924

96.185

0.567
  recA Streptococcus pneumoniae D39

58.924

96.185

0.567
  recA Streptococcus pneumoniae R6

58.924

96.185

0.567
  recA Streptococcus pneumoniae TIGR4

58.924

96.185

0.567
  recA Streptococcus mitis SK321

59.884

93.733

0.561
  recA Streptococcus pyogenes NZ131

62.006

89.646

0.556
  recA Lactococcus lactis subsp. cremoris KW2

61.515

89.918

0.553
  recA Streptococcus mitis NCTC 12261

60.909

89.918

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.159

90.736

0.537

Multiple sequence alignment