Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACM530_RS03760 Genome accession   NZ_CP181333
Coordinates   773834..774892 (-) Length   352 a.a.
NCBI ID   WP_003189042.1    Uniprot ID   A0A7Y7ZLK5
Organism   Pseudomonas sp. NFX183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 775559..790653 773834..774892 flank 667


Gene organization within MGE regions


Location: 773834..790653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM530_RS03760 (ACM530_03760) recA 773834..774892 (-) 1059 WP_003189042.1 recombinase RecA Machinery gene
  ACM530_RS03765 (ACM530_03765) - 774976..775476 (-) 501 WP_106577235.1 CinA family protein -
  ACM530_RS03770 (ACM530_03770) - 775559..776038 (-) 480 WP_416364285.1 lysis system i-spanin subunit Rz -
  ACM530_RS03775 (ACM530_03775) - 776026..776583 (-) 558 WP_416364286.1 glycoside hydrolase family 19 protein -
  ACM530_RS03780 (ACM530_03780) - 776590..777597 (-) 1008 WP_416364287.1 phage late control D family protein -
  ACM530_RS03785 (ACM530_03785) - 777607..777819 (-) 213 WP_106577239.1 tail protein X -
  ACM530_RS03790 (ACM530_03790) - 777812..778195 (-) 384 WP_145161628.1 phage tail protein -
  ACM530_RS03795 (ACM530_03795) - 778195..780408 (-) 2214 WP_416364288.1 phage tail tape measure protein -
  ACM530_RS03800 (ACM530_03800) - 780415..780540 (-) 126 WP_017844653.1 hypothetical protein -
  ACM530_RS03805 (ACM530_03805) - 780537..781109 (-) 573 WP_145161622.1 phage tail assembly protein -
  ACM530_RS03810 (ACM530_03810) - 781292..781798 (-) 507 WP_416364289.1 phage major tail tube protein -
  ACM530_RS03815 (ACM530_03815) - 781798..782964 (-) 1167 WP_106577244.1 phage tail protein -
  ACM530_RS03820 (ACM530_03820) - 782967..783140 (-) 174 WP_177410080.1 hypothetical protein -
  ACM530_RS03825 (ACM530_03825) - 783226..783462 (-) 237 WP_369300849.1 tail fiber assembly protein -
  ACM530_RS03830 (ACM530_03830) - 783472..784224 (-) 753 WP_369300850.1 hypothetical protein -
  ACM530_RS03835 (ACM530_03835) - 784293..784832 (-) 540 WP_369300851.1 hypothetical protein -
  ACM530_RS03840 (ACM530_03840) - 784829..785557 (-) 729 WP_369300852.1 phage tail protein I -
  ACM530_RS03845 (ACM530_03845) - 785554..786549 (-) 996 WP_416364290.1 baseplate J/gp47 family protein -
  ACM530_RS03850 (ACM530_03850) - 786546..786878 (-) 333 WP_416364291.1 phage baseplate protein -
  ACM530_RS03855 (ACM530_03855) - 786888..787499 (-) 612 WP_106577250.1 phage baseplate assembly protein V -
  ACM530_RS03860 (ACM530_03860) - 787503..788018 (-) 516 WP_416364292.1 hypothetical protein -
  ACM530_RS03865 (ACM530_03865) - 788173..788688 (-) 516 WP_416364293.1 hypothetical protein -
  ACM530_RS03870 (ACM530_03870) - 788694..788879 (-) 186 WP_416364294.1 Com family DNA-binding transcriptional regulator -
  ACM530_RS03875 (ACM530_03875) - 788975..789319 (-) 345 WP_416364295.1 phage holin family protein -
  ACM530_RS03880 (ACM530_03880) - 789614..789940 (-) 327 WP_416365144.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37580.12 Da        Isoelectric Point: 5.3036

>NTDB_id=1099772 ACM530_RS03760 WP_003189042.1 773834..774892(-) (recA) [Pseudomonas sp. NFX183]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1099772 ACM530_RS03760 WP_003189042.1 773834..774892(-) (recA) [Pseudomonas sp. NFX183]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGATCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTCGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACTCTGACTCTGTCGGTGATTGCC
CAGGCGCAAAAAATGGGCGCCACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAACTGGG
CGTCAACGTAGACGACCTGCTCGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGATTCCGTGGCAGCCCTGGTACCGAAAGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGT
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGCAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGTTGCACGGTTTCGTCGAGAAATCCGGCGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGATATCGCCGCCACGCTCGAGAAG
CAGATTCGCGACAAGCTGCTGACCGCAGCGCCAGACGTGAAAGCTGCTGCCAATCGTGAGCCGGTTGAAGAAGTCGAAGA
AGCTGACACTGACATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7ZLK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.5

100

0.875
  recA Acinetobacter baylyi ADP1

75

97.727

0.733
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

93.182

0.699
  recA Vibrio cholerae strain A1552

75

93.182

0.699
  recA Glaesserella parasuis strain SC1401

69.034

100

0.69
  recA Ralstonia pseudosolanacearum GMI1000

70.149

95.17

0.668
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.659

100

0.597
  recA Helicobacter pylori 26695

59.091

100

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

60

92.33

0.554
  recA Streptococcus mitis SK321

54.83

100

0.548
  recA Streptococcus pyogenes NZ131

58.232

93.182

0.543
  recA Streptococcus pneumoniae D39

58.589

92.614

0.543
  recA Streptococcus pneumoniae TIGR4

58.589

92.614

0.543
  recA Streptococcus pneumoniae Rx1

58.589

92.614

0.543
  recA Streptococcus pneumoniae R6

58.589

92.614

0.543
  recA Streptococcus mitis NCTC 12261

58.824

91.761

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

91.193

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

92.614

0.526

Multiple sequence alignment