Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACGHAD_RS06225 Genome accession   NZ_AP031500
Coordinates   1501185..1502228 (+) Length   347 a.a.
NCBI ID   WP_339616164.1    Uniprot ID   -
Organism   Gilvimarinus japonicus strain 12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1496185..1507228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHAD_RS06205 (R50076_12320) - 1496783..1497022 (+) 240 WP_382416354.1 hypothetical protein -
  ACGHAD_RS06210 (R50076_12330) fdxA 1497388..1497711 (-) 324 WP_339616167.1 ferredoxin FdxA -
  ACGHAD_RS06215 (R50076_12340) mutS 1497794..1500370 (-) 2577 WP_339616166.1 DNA mismatch repair protein MutS -
  ACGHAD_RS06220 (R50076_12350) - 1500527..1501030 (+) 504 WP_382416352.1 CinA family protein -
  ACGHAD_RS06225 (R50076_12360) recA 1501185..1502228 (+) 1044 WP_339616164.1 recombinase RecA Machinery gene
  ACGHAD_RS06230 (R50076_12370) - 1502343..1502795 (+) 453 WP_382416350.1 regulatory protein RecX -
  ACGHAD_RS06235 (R50076_12380) - 1502941..1503354 (+) 414 WP_382416348.1 prolyl hydroxylase family protein -
  ACGHAD_RS06240 (R50076_12390) rrtA 1503341..1503940 (-) 600 WP_339616161.1 rhombosortase -
  ACGHAD_RS06245 (R50076_12400) - 1504189..1505307 (+) 1119 WP_339616160.1 phosphoserine transaminase -
  ACGHAD_RS06250 (R50076_12410) - 1505390..1506562 (+) 1173 WP_382416345.1 phosphoglycerate dehydrogenase -
  ACGHAD_RS06255 (R50076_12420) - 1506639..1506950 (+) 312 WP_339616158.1 YqfO family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37303.70 Da        Isoelectric Point: 5.1851

>NTDB_id=109957 ACGHAD_RS06225 WP_339616164.1 1501185..1502228(+) (recA) [Gilvimarinus japonicus strain 12-2]
MDANKEKALQAALSQIERQFGKGTVMRMGDREHVAIPAISTGSLGLDVALGIGGLPKGRIVEIYGPESSGKTTLTLQVIA
EAQRAGGNCAFIDAEHALDPIYAEKLGVKVDELIISQPDTGEQALEVSDMLVRSGAVDVLVVDSVAALTPKAEIEGEMGD
HHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVTGSE
TRVKVVKNKVAPPFKQAEFQILYGQGINRLGEVIDCGVKLGMVDKAGSWYSYNGDKIGQGKNNVVKFLQENPDVAKELEG
RVRAEMLGTAEKPVEGEVVEKEQEQEA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=109957 ACGHAD_RS06225 WP_339616164.1 1501185..1502228(+) (recA) [Gilvimarinus japonicus strain 12-2]
ATGGATGCGAATAAAGAGAAGGCGCTACAAGCGGCTTTGAGTCAGATCGAACGTCAGTTTGGTAAAGGTACCGTGATGCG
CATGGGTGACCGTGAGCATGTGGCGATTCCCGCTATTTCTACCGGTTCTCTCGGCCTAGATGTGGCACTGGGTATTGGCG
GTCTGCCTAAAGGGCGAATTGTCGAAATTTACGGCCCCGAATCGTCCGGTAAAACCACCTTAACGCTGCAAGTAATTGCC
GAGGCGCAACGCGCTGGCGGTAACTGCGCCTTTATTGATGCCGAGCACGCCCTAGACCCAATTTACGCCGAGAAACTCGG
TGTAAAAGTCGATGAGCTGATTATTTCGCAGCCCGATACCGGCGAGCAGGCCTTGGAAGTGTCCGATATGCTGGTGCGCT
CGGGCGCCGTTGATGTACTGGTAGTGGATTCGGTGGCGGCACTAACGCCCAAGGCCGAAATTGAAGGCGAGATGGGTGAT
CATCATGTTGGCTTGCAGGCGCGCTTGATGTCGCAAGCGTTGCGTAAAATCACCGGTAATATTAAAAACGCCAATTGTTT
GGTGATTTTTATTAACCAAATTCGTATGAAAATCGGTGTTATGTTCGGCAGCCCCGAGACCACGACCGGCGGCAACGCGC
TTAAATTTTACTCATCAGTACGTCTTGATATCCGCCGGATTGGCTCGGTAAAAGATGGCGATGAAGTTACCGGTTCGGAA
ACTCGCGTTAAGGTGGTTAAAAACAAAGTGGCGCCGCCGTTTAAGCAAGCCGAGTTTCAGATTCTGTACGGTCAGGGTAT
TAACCGTTTGGGCGAGGTTATCGACTGTGGTGTTAAACTGGGCATGGTGGATAAAGCCGGCTCTTGGTATAGCTACAACG
GTGATAAAATTGGCCAGGGTAAAAACAATGTGGTTAAGTTTTTACAGGAGAACCCCGATGTGGCCAAAGAGCTTGAGGGC
CGAGTGCGCGCTGAGATGCTAGGCACAGCCGAAAAACCTGTTGAAGGCGAGGTCGTCGAAAAAGAGCAGGAGCAAGAAGC
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.091

95.101

0.752
  recA Acinetobacter baylyi ADP1

75.455

95.101

0.718
  recA Acinetobacter baumannii D1279779

75.076

94.813

0.712
  recA Ralstonia pseudosolanacearum GMI1000

73.78

94.524

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

94.236

0.692
  recA Vibrio cholerae strain A1552

73.394

94.236

0.692
  recA Neisseria gonorrhoeae MS11

71.077

93.66

0.666
  recA Neisseria gonorrhoeae MS11

71.077

93.66

0.666
  recA Neisseria gonorrhoeae strain FA1090

71.077

93.66

0.666
  recA Glaesserella parasuis strain SC1401

72.1

91.931

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

94.236

0.614
  recA Helicobacter pylori strain NCTC11637

60.756

99.135

0.602
  recA Helicobacter pylori 26695

60.756

99.135

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.03

95.101

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

58.651

98.271

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

92.507

0.573
  recA Streptococcus mutans UA159

57.225

99.712

0.571
  recA Streptococcus pneumoniae R6

57.927

94.524

0.548
  recA Streptococcus pneumoniae D39

57.927

94.524

0.548
  recA Streptococcus pneumoniae TIGR4

57.927

94.524

0.548
  recA Streptococcus mitis SK321

57.927

94.524

0.548
  recA Streptococcus pneumoniae Rx1

57.927

94.524

0.548
  recA Streptococcus mitis NCTC 12261

57.622

94.524

0.545
  recA Streptococcus pyogenes NZ131

57.669

93.948

0.542
  recA Lactococcus lactis subsp. cremoris KW2

57.317

94.524

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.632

92.507

0.533

Multiple sequence alignment