Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACK8RZ_RS09840 Genome accession   NZ_CP181174
Coordinates   2231823..2232881 (-) Length   352 a.a.
NCBI ID   WP_126963343.1    Uniprot ID   A0AAN3U9H8
Organism   Clostridium perfringens strain XZ-E1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2226823..2237881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8RZ_RS09820 (ACK8RZ_09820) - 2227761..2228021 (-) 261 WP_003459789.1 HPr family phosphocarrier protein -
  ACK8RZ_RS09825 (ACK8RZ_09825) - 2228116..2229309 (-) 1194 WP_416187505.1 pyridoxal phosphate-dependent aminotransferase -
  ACK8RZ_RS09830 (ACK8RZ_09830) - 2229462..2229722 (-) 261 WP_003459803.1 stage V sporulation protein S -
  ACK8RZ_RS09835 (ACK8RZ_09835) rny 2229940..2231475 (-) 1536 WP_003459753.1 ribonuclease Y -
  ACK8RZ_RS09840 (ACK8RZ_09840) recA 2231823..2232881 (-) 1059 WP_126963343.1 recombinase RecA Machinery gene
  ACK8RZ_RS09845 (ACK8RZ_09845) pgsA 2233017..2233607 (-) 591 WP_096516383.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACK8RZ_RS09850 (ACK8RZ_09850) rimO 2233591..2234928 (-) 1338 WP_416187506.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACK8RZ_RS09855 (ACK8RZ_09855) - 2234997..2237387 (-) 2391 WP_110084382.1 FtsK/SpoIIIE family DNA translocase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37994.47 Da        Isoelectric Point: 5.0692

>NTDB_id=1099412 ACK8RZ_RS09840 WP_126963343.1 2231823..2232881(-) (recA) [Clostridium perfringens strain XZ-E1]
MANIDKDKLKAIEMAMGQIEKQFGKGSVMKLGEQGAPQMDAVSTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALH
VVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTGEQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGIT
GNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGRENAKQYLKENPAVALD
IENQIREKYSLPLAKAVESVNIEENTEESVES

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1099412 ACK8RZ_RS09840 WP_126963343.1 2231823..2232881(-) (recA) [Clostridium perfringens strain XZ-E1]
ATGGCAAATATAGATAAAGATAAATTAAAAGCTATTGAGATGGCTATGGGTCAAATAGAGAAGCAATTTGGAAAGGGATC
AGTAATGAAGCTTGGAGAGCAAGGAGCTCCTCAAATGGATGCTGTTTCTACTGGATGCTTAGATCTTGATATAGCTTTAG
GAATTGGTGGAGTACCAAAAGGAAGAATTATTGAGATATATGGACCAGAGAGTTCAGGTAAAACAACAGTGGCTTTACAT
GTAGTAGCAGAGGCACAAAAATTAGGTGGAGCAGCAGCATATATAGATGCAGAGCATGCTTTAGACCCAGTTTATGCAAA
AAGATTAGGTGTTAATATAGATGATTTAGTAGTTTCACAACCAGATACAGGAGAGCAAGCTTTAGAGATAACAGAAGCTT
TAGTTAGATCAGGAGCTATAGATGTTTTAGTTGTGGACTCAGTTGCGGCTTTAGTTCCAAGAGCGGAAATTGAAGGTGAA
ATGGGTGATTCTCACGTTGGTCTTCAAGCTAGATTAATGTCACAAGCTTTAAGAAAGTTAACAGGAACAATAAACAAATC
AAACTGCGTAGTAATATTCATAAACCAATTAAGAGAAAAAGTTGGTATAATGTTTGGTAATCCAGAAACAACACCAGGTG
GTAGAGCATTAAAGTTCTATGCTTCAGTTAGAATGGATATAAGAAGAATAGATTCAATAAAACAAGGTGACGGAATAACT
GGTAATAGAACAAGAGTTAAAATAGTTAAGAATAAGGTTGCCCCTCCATTTAAGCAAGCCGAATTTGATATAATGTACAA
TGAAGGTATATCAAAAGAAGGTAACATAGTAGATGTTGGAGTAAAAGAGAATATAGTACAAAAAAGTGGTGCTTGGTTCT
CATATGGAGACATAAGATTAGGCCAAGGTAGAGAAAATGCTAAACAATATTTAAAAGAGAATCCAGCAGTTGCTTTAGAT
ATAGAAAATCAAATAAGAGAAAAATATTCTCTTCCTTTAGCTAAGGCTGTTGAATCAGTAAATATAGAAGAAAATACAGA
AGAGTCTGTTGAAAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.385

92.33

0.659
  recA Latilactobacillus sakei subsp. sakei 23K

63.793

98.864

0.631
  recA Helicobacter pylori strain NCTC11637

67.077

92.33

0.619
  recA Helicobacter pylori 26695

67.077

92.33

0.619
  recA Acinetobacter baylyi ADP1

63.188

98.011

0.619
  recA Streptococcus mutans UA159

61.143

99.432

0.608
  recA Pseudomonas stutzeri DSM 10701

65.846

92.33

0.608
  recA Streptococcus pneumoniae D39

61.808

97.443

0.602
  recA Streptococcus pneumoniae TIGR4

61.808

97.443

0.602
  recA Streptococcus pneumoniae R6

61.808

97.443

0.602
  recA Streptococcus pneumoniae Rx1

61.808

97.443

0.602
  recA Acinetobacter baumannii D1279779

65.231

92.33

0.602
  recA Ralstonia pseudosolanacearum GMI1000

64.634

93.182

0.602
  recA Vibrio cholerae strain A1552

64.134

93.466

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.134

93.466

0.599
  recA Glaesserella parasuis strain SC1401

61.047

97.727

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.815

92.045

0.597
  recA Streptococcus mitis SK321

64.417

92.614

0.597
  recA Streptococcus mitis NCTC 12261

64.11

92.614

0.594
  recA Neisseria gonorrhoeae strain FA1090

64.798

91.193

0.591
  recA Neisseria gonorrhoeae MS11

64.798

91.193

0.591
  recA Neisseria gonorrhoeae MS11

64.798

91.193

0.591
  recA Streptococcus pyogenes NZ131

63.609

92.898

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.805

93.182

0.585
  recA Lactococcus lactis subsp. cremoris KW2

63.19

92.614

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

92.045

0.562

Multiple sequence alignment