Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACGHM3_RS06715 Genome accession   NZ_AP031496
Coordinates   1548843..1549877 (+) Length   344 a.a.
NCBI ID   WP_345417187.1    Uniprot ID   A0AAV3TXZ8
Organism   Halioxenophilus aromaticivorans strain KU68F     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1543843..1554877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHM3_RS06700 (R50071_13510) - 1544178..1545056 (+) 879 WP_345417178.1 transporter substrate-binding domain-containing protein -
  ACGHM3_RS06705 (R50071_13520) - 1545483..1547246 (+) 1764 WP_345417181.1 PQQ-dependent methanol/ethanol family dehydrogenase -
  ACGHM3_RS06710 (R50071_13540) - 1548094..1548582 (+) 489 WP_345417184.1 CinA family protein -
  ACGHM3_RS06715 (R50071_13550) recA 1548843..1549877 (+) 1035 WP_345417187.1 recombinase RecA Machinery gene
  ACGHM3_RS06720 (R50071_13560) - 1549924..1550427 (+) 504 WP_345417190.1 DUF3224 domain-containing protein -
  ACGHM3_RS06725 (R50071_13570) - 1550546..1551082 (+) 537 WP_345417193.1 regulatory protein RecX -
  ACGHM3_RS06730 (R50071_13580) - 1551173..1551676 (-) 504 WP_345417196.1 hypothetical protein -
  ACGHM3_RS06735 (R50071_13590) - 1552039..1552929 (+) 891 WP_345417199.1 YihY/virulence factor BrkB family protein -
  ACGHM3_RS06740 (R50071_13600) - 1553119..1554516 (-) 1398 WP_345417202.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36773.96 Da        Isoelectric Point: 5.0195

>NTDB_id=109875 ACGHM3_RS06715 WP_345417187.1 1548843..1549877(+) (recA) [Halioxenophilus aromaticivorans strain KU68F]
MDANKEKALSAALSQIERQFGKGTVMRMGDRERVKVPTISTGSIGLDAALGVGGLPKGRIVEIYGPESSGKTTLTLQVIA
EAQKQGGTCAFVDAEHALDPIYAEKLGVNVDDLIVSQPDTGEQALEVADMLVRSGAIDVLVVDSVAALTPKAEIEGEMGD
HHVGLQARLMSQALRKITGNIKSANCLAIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVTGNE
TRVKVVKNKVAPPFKQAEFQILYGQGINLLGEVIDFGVKLGLIDKSGAWYSYQGDKIGQGKNNSIRFLSENPEIAQTIEA
QIRQQLLPDSQPAPAEEGAEPAEA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=109875 ACGHM3_RS06715 WP_345417187.1 1548843..1549877(+) (recA) [Halioxenophilus aromaticivorans strain KU68F]
ATGGACGCAAACAAAGAAAAGGCACTCTCGGCAGCACTATCGCAAATTGAACGTCAATTCGGTAAAGGTACCGTAATGCG
CATGGGTGACCGTGAGCGGGTTAAAGTACCCACCATTTCCACGGGCTCCATTGGTTTGGATGCAGCATTAGGTGTGGGCG
GTTTACCTAAGGGCCGAATTGTCGAGATCTACGGCCCAGAATCCTCCGGTAAAACAACCCTGACGTTGCAGGTTATCGCC
GAGGCTCAAAAGCAGGGCGGCACCTGCGCCTTTGTGGATGCTGAACACGCCTTAGACCCAATCTACGCCGAAAAACTGGG
CGTAAACGTGGACGACCTAATTGTTTCCCAGCCAGATACCGGTGAGCAAGCTCTAGAAGTAGCCGACATGCTGGTTCGTT
CCGGCGCCATTGATGTACTAGTGGTTGACTCTGTTGCAGCGCTTACTCCCAAGGCAGAGATCGAAGGCGAAATGGGTGAT
CACCACGTGGGCCTGCAAGCCCGTTTGATGTCTCAGGCTCTGCGTAAAATCACCGGTAATATCAAAAGCGCAAATTGCTT
GGCCATTTTTATTAACCAAATCCGTATGAAGATTGGCGTAATGTTCGGCTCACCAGAAACCACCACCGGTGGTAACGCGC
TGAAATTCTACTCTTCCGTGCGCCTGGATATCCGCCGCATTGGTTCTGTAAAAGAAGGCGACGAAGTCACCGGTAACGAA
ACCCGCGTTAAAGTGGTAAAAAACAAGGTGGCGCCGCCCTTTAAACAAGCGGAGTTCCAGATTTTGTACGGCCAGGGAAT
CAACCTGCTGGGTGAGGTAATCGACTTTGGCGTTAAGCTTGGTTTAATTGATAAATCCGGCGCTTGGTATAGCTACCAGG
GCGATAAAATTGGCCAGGGCAAGAATAACTCCATTCGTTTCTTAAGCGAAAACCCGGAGATTGCACAAACCATCGAAGCG
CAGATCCGCCAACAACTGCTACCCGATAGCCAGCCGGCCCCAGCCGAAGAAGGCGCCGAGCCAGCAGAGGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.529

98.837

0.776
  recA Acinetobacter baylyi ADP1

74.709

100

0.747
  recA Acinetobacter baumannii D1279779

76.453

95.058

0.727
  recA Vibrio cholerae strain A1552

71.81

97.965

0.703
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.81

97.965

0.703
  recA Ralstonia pseudosolanacearum GMI1000

73.313

94.767

0.695
  recA Neisseria gonorrhoeae MS11

72.84

94.186

0.686
  recA Neisseria gonorrhoeae strain FA1090

72.84

94.186

0.686
  recA Neisseria gonorrhoeae MS11

72.84

94.186

0.686
  recA Glaesserella parasuis strain SC1401

69.876

93.605

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

95.058

0.625
  recA Helicobacter pylori 26695

61.628

100

0.616
  recA Helicobacter pylori strain NCTC11637

61.337

100

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

95.64

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

62.229

93.895

0.584
  recA Streptococcus mitis SK321

57.225

100

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

61.755

92.733

0.573
  recA Streptococcus mutans UA159

60.308

94.477

0.57
  recA Streptococcus pneumoniae Rx1

59.146

95.349

0.564
  recA Streptococcus pneumoniae D39

59.146

95.349

0.564
  recA Streptococcus pneumoniae TIGR4

59.146

95.349

0.564
  recA Streptococcus pneumoniae R6

59.146

95.349

0.564
  recA Streptococcus mitis NCTC 12261

59.146

95.349

0.564
  recA Lactococcus lactis subsp. cremoris KW2

56.677

97.965

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.248

92.733

0.549
  recA Streptococcus pyogenes NZ131

58.514

93.895

0.549

Multiple sequence alignment