Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ABXS87_RS06880 | Genome accession | NZ_AP031492 |
| Coordinates | 1424251..1425297 (+) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain ATCC 43600 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1398203..1463037 | 1424251..1425297 | within | 0 |
Gene organization within MGE regions
Location: 1398203..1463037
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABXS87_RS06765 (SEROH_12590) | rimP | 1400619..1401080 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| ABXS87_RS06770 (SEROH_12600) | nusA | 1401110..1402264 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| ABXS87_RS06775 (SEROH_12610) | - | 1402271..1402552 (+) | 282 | WP_003419469.1 | YlxR family protein | - |
| ABXS87_RS06780 (SEROH_12620) | - | 1402542..1402853 (+) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| ABXS87_RS06785 (SEROH_12630) | infB | 1402875..1404815 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| ABXS87_RS06790 (SEROH_12640) | rbfA | 1404858..1405238 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| ABXS87_RS06795 (SEROH_12650) | - | 1405219..1405896 (+) | 678 | Protein_1246 | DHH family phosphoesterase | - |
| ABXS87_RS06800 (SEROH_12660) | tnpB | 1406536..1407654 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| ABXS87_RS06805 (SEROH_12670) | - | 1407772..1408077 (+) | 306 | Protein_1248 | DHHA1 domain-containing protein | - |
| ABXS87_RS06810 (SEROH_12680) | truB | 1408090..1408995 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| ABXS87_RS06815 (SEROH_12690) | - | 1409126..1410055 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ABXS87_RS06820 (SEROH_12700) | rpsO | 1410159..1410416 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| ABXS87_RS06825 (SEROH_12710) | - | 1410656..1411501 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| ABXS87_RS06830 (SEROH_12720) | pnp | 1411626..1413737 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| ABXS87_RS06835 (SEROH_12730) | - | 1414003..1414746 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| ABXS87_RS06840 (SEROH_12740) | - | 1414904..1416151 (+) | 1248 | WP_009902409.1 | pitrilysin family protein | - |
| ABXS87_RS06845 (SEROH_12750) | - | 1416186..1416431 (+) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| ABXS87_RS06850 (SEROH_12760) | dapG | 1416441..1417664 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| ABXS87_RS06855 (SEROH_12770) | - | 1417777..1418511 (+) | 735 | WP_021364422.1 | ATP-dependent Clp protease proteolytic subunit | - |
| ABXS87_RS06860 (SEROH_12780) | - | 1418634..1421045 (+) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| ABXS87_RS06865 (SEROH_12790) | mnmH | 1421048..1422106 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| ABXS87_RS06870 (SEROH_12800) | rimO | 1422100..1423434 (+) | 1335 | WP_061364317.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| ABXS87_RS06875 (SEROH_12810) | pgsA | 1423421..1423963 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| ABXS87_RS06880 (SEROH_12820) | recA | 1424251..1425297 (+) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| ABXS87_RS06885 (SEROH_12830) | rny | 1425473..1427014 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| ABXS87_RS06890 (SEROH_12840) | - | 1427649..1429430 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| ABXS87_RS06895 (SEROH_12850) | lepB | 1429512..1430042 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| ABXS87_RS06900 (SEROH_12860) | - | 1430082..1430906 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| ABXS87_RS06905 (SEROH_12870) | - | 1431163..1432071 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| ABXS87_RS06910 (SEROH_12880) | purB | 1432215..1433660 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| ABXS87_RS06915 (SEROH_12890) | - | 1433971..1434423 (+) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| ABXS87_RS06920 (SEROH_12900) | - | 1434835..1436412 (+) | 1578 | WP_021364419.1 | PTS transporter subunit EIIC | - |
| ABXS87_RS06925 (SEROH_12910) | - | 1436560..1437312 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| ABXS87_RS06930 (SEROH_12920) | - | 1437445..1438791 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| ABXS87_RS06935 (SEROH_12930) | - | 1438903..1440099 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| ABXS87_RS06940 (SEROH_12940) | galT | 1440484..1441434 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| ABXS87_RS06945 (SEROH_12950) | - | 1441595..1442347 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| ABXS87_RS06950 (SEROH_12960) | - | 1442439..1443215 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| ABXS87_RS06955 (SEROH_12970) | - | 1443530..1445428 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| ABXS87_RS06960 (SEROH_12980) | - | 1445556..1446677 (-) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| ABXS87_RS06965 (SEROH_12990) | - | 1446876..1447208 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| ABXS87_RS06970 (SEROH_13000) | - | 1447195..1448253 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| ABXS87_RS06975 (SEROH_13010) | - | 1448246..1449316 (+) | 1071 | WP_021364425.1 | DUF4097 family beta strand repeat-containing protein | - |
| ABXS87_RS06980 (SEROH_13020) | - | 1449418..1449954 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| ABXS87_RS06985 (SEROH_13030) | - | 1450070..1450777 (+) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| ABXS87_RS06990 (SEROH_13040) | - | 1450779..1451495 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| ABXS87_RS06995 (SEROH_13050) | - | 1451497..1452255 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| ABXS87_RS07000 (SEROH_13060) | - | 1452390..1453778 (+) | 1389 | WP_021364432.1 | two-component system sensor histidine kinase | - |
| ABXS87_RS07005 (SEROH_13070) | - | 1453854..1454675 (-) | 822 | WP_021364435.1 | pyridoxamine kinase | - |
| ABXS87_RS07010 (SEROH_13080) | - | 1454926..1456080 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| ABXS87_RS07015 (SEROH_13090) | - | 1456263..1456463 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| ABXS87_RS07020 (SEROH_13100) | - | 1456884..1457312 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| ABXS87_RS07025 (SEROH_13110) | - | 1457455..1458210 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| ABXS87_RS07030 (SEROH_13130) | - | 1458911..1459417 (-) | 507 | WP_003428186.1 | hypothetical protein | - |
| ABXS87_RS07035 (SEROH_13140) | - | 1459499..1459819 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| ABXS87_RS07040 (SEROH_13150) | - | 1459988..1460185 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| ABXS87_RS07045 (SEROH_13160) | - | 1460290..1460730 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| ABXS87_RS07050 (SEROH_13170) | - | 1460979..1461422 (+) | 444 | WP_003438413.1 | DUF6838 family protein | - |
| ABXS87_RS07055 (SEROH_13180) | - | 1461427..1462491 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| ABXS87_RS07060 (SEROH_13190) | - | 1462505..1462933 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=109843 ABXS87_RS06880 WP_021364420.1 1424251..1425297(+) (recA) [Clostridioides difficile strain ATCC 43600]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=109843 ABXS87_RS06880 WP_021364420.1 1424251..1425297(+) (recA) [Clostridioides difficile strain ATCC 43600]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.