Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACL43R_RS01285 Genome accession   NZ_CP180647
Coordinates   255855..257006 (+) Length   383 a.a.
NCBI ID   WP_416037635.1    Uniprot ID   -
Organism   Lactococcus formosensis strain JAL11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 250855..262006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL43R_RS01265 (ACL43R_01265) - 251557..252864 (-) 1308 WP_213495724.1 PTS sugar transporter subunit IIC -
  ACL43R_RS01270 (ACL43R_01270) - 252867..253664 (-) 798 WP_213495721.1 tyrosine-protein phosphatase -
  ACL43R_RS01275 (ACL43R_01275) - 253999..254742 (+) 744 WP_213495719.1 MurR/RpiR family transcriptional regulator -
  ACL43R_RS01280 (ACL43R_01280) mutM 254930..255754 (+) 825 WP_096368741.1 DNA-formamidopyrimidine glycosylase -
  ACL43R_RS01285 (ACL43R_01285) recA 255855..257006 (+) 1152 WP_416037635.1 recombinase RecA Machinery gene
  ACL43R_RS01290 (ACL43R_01290) - 257042..258406 (-) 1365 WP_165711820.1 amino acid permease -
  ACL43R_RS01295 (ACL43R_01295) - 258611..258985 (+) 375 WP_017369481.1 YlbF family regulator -
  ACL43R_RS01300 (ACL43R_01300) - 258969..259325 (+) 357 WP_096368739.1 YlbG family protein -
  ACL43R_RS01305 (ACL43R_01305) - 259384..259902 (-) 519 WP_165711821.1 dithiol-disulfide isomerase -
  ACL43R_RS01310 (ACL43R_01310) - 260031..260627 (-) 597 WP_017369478.1 CYTH domain-containing protein -
  ACL43R_RS01315 (ACL43R_01315) - 260944..261624 (+) 681 WP_017369477.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40983.88 Da        Isoelectric Point: 5.0750

>NTDB_id=1097136 ACL43R_RS01285 WP_416037635.1 255855..257006(+) (recA) [Lactococcus formosensis strain JAL11]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYASAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIESDEENEKEDAKPAKADEKVKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=1097136 ACL43R_RS01285 WP_416037635.1 255855..257006(+) (recA) [Lactococcus formosensis strain JAL11]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCATTAAAAGATGC
ACTTGACCTCATCGAAAAAGATTTTGGTAAAGGTTCTTTGATGCGTTTAGGGGAAGCTGCGAGTCAAAAAGTTCAAGTGA
CAAGTTCAGGTAGTTTGGCCTTGGATATTGCGCTTGGTGCAGGAGGTTACCCTAAAGGTCGTATCATCGAGATTTATGGT
CCGGAAAGTTCTGGTAAGACAACAGTTGCGCTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGTGGTATTGCTGCCTTTAT
CGATGCAGAGCATGCTTTGGACCCCGTCTATGCATCAGCGATCGGCGTAGATATTGACCAGCTTCTTTTGTCACAACCAG
ACTATGGTGAGCAAGGCTTGCAAATTGCTGAGAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCTTTGACACCACGTGCCGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCGATCTTTATCAACCAATTGCGCGAAAAAGTCG
GTGTTATGTTTGGTAGCCCAGAAACAACGCCTGGTGGTCGTGCTTTGAAATTCTATGCTTCTGTACGTTTAGACGTTCGT
GGTAGCACAAAAATCGAAGAAGGCTCTGGTGACAACAAAACAGCCATCGGTAAGTTGACGAAGATTAAAGTTGTTAAAAA
CAAAGTTGCGCCACCATTTAAAGTTGCTTTAGTAGATATCATGTTTGGTGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CAATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGTGCTTGGTTCTCTTATAATGACGAAAAGATCGGTCAAGGTGCG
GAGAAAGCAAAAGCTTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGAAAGTGATGAAGAAAATGAAAAAGAAGATGCTAAACCAGCAAAAGCAGATGAAAAAGTAAAGGTTGAAGCTGCTG
GAGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.364

91.906

0.794
  recA Streptococcus pneumoniae Rx1

76.031

100

0.77
  recA Streptococcus pneumoniae D39

76.031

100

0.77
  recA Streptococcus pneumoniae R6

76.031

100

0.77
  recA Streptococcus pneumoniae TIGR4

76.031

100

0.77
  recA Streptococcus mitis NCTC 12261

76.562

100

0.768
  recA Streptococcus mitis SK321

76.302

100

0.765
  recA Streptococcus mutans UA159

76.986

95.3

0.734
  recA Streptococcus pyogenes NZ131

80.233

89.817

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

63.352

91.906

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Acinetobacter baumannii D1279779

57.558

89.817

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.143

89.556

0.512
  recA Glaesserella parasuis strain SC1401

57.31

89.295

0.512
  recA Helicobacter pylori strain NCTC11637

58.036

87.728

0.509
  recA Helicobacter pylori 26695

58.036

87.728

0.509
  recA Vibrio cholerae strain A1552

60.185

84.595

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.595

0.509
  recA Acinetobacter baylyi ADP1

60.185

84.595

0.509
  recA Neisseria gonorrhoeae strain FA1090

57.015

87.467

0.499
  recA Neisseria gonorrhoeae MS11

57.015

87.467

0.499
  recA Neisseria gonorrhoeae MS11

57.015

87.467

0.499
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.768

0.488
  recA Pseudomonas stutzeri DSM 10701

56.173

84.595

0.475

Multiple sequence alignment