Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ABWV32_RS07570 | Genome accession | NZ_AP031467 |
| Coordinates | 1519045..1520097 (-) | Length | 350 a.a. |
| NCBI ID | WP_002437037.1 | Uniprot ID | A0A4Q9WJI9 |
| Organism | Staphylococcus capitis strain NBRC 115779 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1517482..1591789 | 1519045..1520097 | within | 0 |
Gene organization within MGE regions
Location: 1517482..1591789
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWV32_RS07570 (SKB0123_15000) | recA | 1519045..1520097 (-) | 1053 | WP_002437037.1 | recombinase RecA | Machinery gene |
| ABWV32_RS07575 (SKB0123_15010) | - | 1520266..1521414 (-) | 1149 | WP_353304721.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| ABWV32_RS07580 (SKB0123_15020) | pgsA | 1521556..1522137 (-) | 582 | WP_353304722.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| ABWV32_RS07585 (SKB0123_15030) | - | 1522165..1522557 (-) | 393 | WP_016898116.1 | helix-turn-helix domain-containing protein | - |
| ABWV32_RS07590 (SKB0123_15040) | - | 1522576..1523403 (-) | 828 | WP_016898115.1 | YmfK family protein | - |
| ABWV32_RS07595 (SKB0123_15050) | - | 1523585..1524292 (-) | 708 | WP_353304723.1 | SDR family oxidoreductase | - |
| ABWV32_RS07600 (SKB0123_15060) | - | 1524292..1525578 (-) | 1287 | WP_353304724.1 | pitrilysin family protein | - |
| ABWV32_RS07605 (SKB0123_15070) | - | 1525578..1526852 (-) | 1275 | WP_016898114.1 | pitrilysin family protein | - |
| ABWV32_RS07610 (SKB0123_15080) | - | 1526893..1527603 (-) | 711 | WP_049388886.1 | GntR family transcriptional regulator | - |
| ABWV32_RS07615 (SKB0123_15090) | - | 1527606..1530026 (-) | 2421 | WP_002453106.1 | DNA translocase FtsK | - |
| ABWV32_RS07620 (SKB0123_15100) | - | 1530275..1531948 (-) | 1674 | WP_002453105.1 | ribonuclease J | - |
| ABWV32_RS07625 (SKB0123_15110) | pnp | 1532180..1534279 (-) | 2100 | WP_016898112.1 | polyribonucleotide nucleotidyltransferase | - |
| ABWV32_RS07630 (SKB0123_15120) | rpsO | 1534434..1534703 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| ABWV32_RS07635 (SKB0123_15130) | ribF | 1534825..1535796 (-) | 972 | WP_002453103.1 | riboflavin biosynthesis protein RibF | - |
| ABWV32_RS07640 (SKB0123_15140) | truB | 1535812..1536729 (-) | 918 | WP_002453102.1 | tRNA pseudouridine(55) synthase TruB | - |
| ABWV32_RS07645 (SKB0123_15150) | rbfA | 1536872..1537222 (-) | 351 | WP_002453101.1 | 30S ribosome-binding factor RbfA | - |
| ABWV32_RS07650 (SKB0123_15160) | infB | 1537380..1539554 (-) | 2175 | WP_016898111.1 | translation initiation factor IF-2 | - |
| ABWV32_RS07655 (SKB0123_15170) | - | 1539559..1539876 (-) | 318 | WP_353304725.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| ABWV32_RS07660 (SKB0123_15180) | - | 1539873..1540157 (-) | 285 | WP_002453098.1 | YlxR family protein | - |
| ABWV32_RS07665 (SKB0123_15190) | nusA | 1540174..1541397 (-) | 1224 | WP_016898110.1 | transcription termination factor NusA | - |
| ABWV32_RS07670 (SKB0123_15200) | rimP | 1541418..1541885 (-) | 468 | WP_002453096.1 | ribosome maturation factor RimP | - |
| ABWV32_RS07675 (SKB0123_15210) | - | 1542112..1546422 (-) | 4311 | WP_353305073.1 | PolC-type DNA polymerase III | - |
| ABWV32_RS07680 (SKB0123_15220) | - | 1546679..1548382 (-) | 1704 | WP_002453094.1 | proline--tRNA ligase | - |
| ABWV32_RS07685 (SKB0123_15230) | rseP | 1548402..1549688 (-) | 1287 | WP_002453093.1 | RIP metalloprotease RseP | - |
| ABWV32_RS07690 (SKB0123_15240) | - | 1549928..1550710 (-) | 783 | WP_002453092.1 | phosphatidate cytidylyltransferase | - |
| ABWV32_RS07695 (SKB0123_15250) | - | 1550714..1551484 (-) | 771 | WP_002453091.1 | isoprenyl transferase | - |
| ABWV32_RS07700 (SKB0123_15260) | frr | 1551760..1552314 (-) | 555 | WP_002453090.1 | ribosome recycling factor | - |
| ABWV32_RS07705 (SKB0123_15270) | pyrH | 1552331..1553053 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| ABWV32_RS07710 (SKB0123_15280) | tsf | 1553190..1554068 (-) | 879 | WP_002453089.1 | translation elongation factor Ts | - |
| ABWV32_RS07715 (SKB0123_15290) | rpsB | 1554219..1555007 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| ABWV32_RS07720 (SKB0123_15300) | codY | 1555263..1556036 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| ABWV32_RS07725 (SKB0123_15310) | hslU | 1556059..1557462 (-) | 1404 | WP_002453087.1 | ATP-dependent protease ATPase subunit HslU | - |
| ABWV32_RS07730 (SKB0123_15320) | hslV | 1557547..1558089 (-) | 543 | WP_002453086.1 | ATP-dependent protease subunit HslV | - |
| ABWV32_RS07735 (SKB0123_15330) | xerC | 1558093..1558983 (-) | 891 | WP_353304726.1 | tyrosine recombinase XerC | - |
| ABWV32_RS07740 (SKB0123_15340) | trmFO | 1559220..1560527 (-) | 1308 | WP_002453084.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ABWV32_RS07745 (SKB0123_15350) | topA | 1560553..1562628 (-) | 2076 | WP_029625697.1 | type I DNA topoisomerase | - |
| ABWV32_RS07750 | dprA | 1562806..1563678 (-) | 873 | Protein_1490 | DNA-processing protein DprA | - |
| ABWV32_RS07755 (SKB0123_15380) | sucD | 1564167..1565075 (-) | 909 | WP_002453081.1 | succinate--CoA ligase subunit alpha | - |
| ABWV32_RS07760 (SKB0123_15390) | sucC | 1565097..1566263 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ABWV32_RS07765 (SKB0123_15400) | - | 1566371..1567141 (-) | 771 | WP_002453080.1 | ribonuclease HII | - |
| ABWV32_RS07770 (SKB0123_15410) | ylqF | 1567143..1568009 (-) | 867 | WP_002453079.1 | ribosome biogenesis GTPase YlqF | - |
| ABWV32_RS07775 (SKB0123_15420) | - | 1568289..1570889 (+) | 2601 | WP_353304727.1 | YfhO family protein | - |
| ABWV32_RS07780 (SKB0123_15430) | - | 1570882..1573503 (+) | 2622 | WP_353304728.1 | YfhO family protein | - |
| ABWV32_RS07785 (SKB0123_15440) | - | 1573599..1573745 (-) | 147 | Protein_1497 | IS3 family transposase | - |
| ABWV32_RS07790 (SKB0123_15450) | - | 1573981..1574109 (+) | 129 | WP_260840563.1 | hypothetical protein | - |
| ABWV32_RS07795 (SKB0123_15460) | - | 1574430..1574597 (+) | 168 | WP_353304729.1 | hypothetical protein | - |
| ABWV32_RS07800 (SKB0123_15480) | rplS | 1575174..1575524 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| ABWV32_RS07805 (SKB0123_15490) | trmD | 1575630..1576367 (-) | 738 | WP_353304730.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ABWV32_RS07810 (SKB0123_15500) | rimM | 1576367..1576870 (-) | 504 | WP_002453072.1 | ribosome maturation factor RimM | - |
| ABWV32_RS07815 (SKB0123_15510) | rpsP | 1577157..1577432 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| ABWV32_RS07820 (SKB0123_15520) | ffh | 1577858..1579225 (-) | 1368 | WP_002453070.1 | signal recognition particle protein | - |
| ABWV32_RS07825 (SKB0123_15530) | - | 1579253..1579588 (-) | 336 | WP_353304731.1 | putative DNA-binding protein | - |
| ABWV32_RS07830 (SKB0123_15540) | ftsY | 1579575..1580834 (-) | 1260 | WP_002453068.1 | signal recognition particle-docking protein FtsY | - |
| ABWV32_RS07835 (SKB0123_15550) | smc | 1580831..1584400 (-) | 3570 | WP_353304732.1 | chromosome segregation protein SMC | - |
| ABWV32_RS07840 (SKB0123_15560) | rnc | 1584524..1585261 (-) | 738 | WP_002453066.1 | ribonuclease III | - |
| ABWV32_RS07845 (SKB0123_15570) | - | 1585378..1585611 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| ABWV32_RS07850 (SKB0123_15580) | fabG | 1586344..1587078 (-) | 735 | WP_002435264.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| ABWV32_RS07855 (SKB0123_15590) | fabD | 1587071..1587997 (-) | 927 | WP_353304733.1 | ACP S-malonyltransferase | - |
| ABWV32_RS07860 (SKB0123_15600) | plsX | 1587990..1588976 (-) | 987 | WP_002453062.1 | phosphate acyltransferase PlsX | - |
| ABWV32_RS07865 (SKB0123_15610) | fapR | 1588969..1589538 (-) | 570 | WP_353304734.1 | transcription factor FapR | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37971.88 Da Isoelectric Point: 4.9318
>NTDB_id=109685 ABWV32_RS07570 WP_002437037.1 1519045..1520097(-) (recA) [Staphylococcus capitis strain NBRC 115779]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=109685 ABWV32_RS07570 WP_002437037.1 1519045..1520097(-) (recA) [Staphylococcus capitis strain NBRC 115779]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACTTCAAGTGGTTCTGTGACGGTGGATAATGCCCTAGGTGTAGGCG
GTTATCCTAAAGGAAGAATTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCTCTACATGCAATTGCA
GAAGTTCAAAAAAATGGTGGAGTAGCTGCATTTATTGATGCCGAACATGCACTTGACCCTGTTTATGCTCAAGCTTTAGG
CGTAGATATTGATAACCTTTATTTATCTCAACCTGACCATGGGGAACAAGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCCGTAGACATTGTCGTAGTTGACTCTGTAGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCTAGATTAATGTCACAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACTACGCCAGGTGGCCGAGCAT
TAAAATTCTATAGTTCTGTAAGATTGGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACAAAAATCAAAGTTGTAAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTATGGTCAAGGAAT
TTCTAAAGAAGGTGAATTAATTGACTTAGGTGTTGAAAACGATATCGTTGATAAATCTGGCGCTTGGTATTCTTACAACG
GCGACCGAATGGGTCAAGGTAAAGAAAATGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGTGAAAAATTAGGAATATTTGATGGTGACGTTGAAGAAACAGATGCTGAAGAGGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACTTCAAGTGGTTCTGTGACGGTGGATAATGCCCTAGGTGTAGGCG
GTTATCCTAAAGGAAGAATTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCTCTACATGCAATTGCA
GAAGTTCAAAAAAATGGTGGAGTAGCTGCATTTATTGATGCCGAACATGCACTTGACCCTGTTTATGCTCAAGCTTTAGG
CGTAGATATTGATAACCTTTATTTATCTCAACCTGACCATGGGGAACAAGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCCGTAGACATTGTCGTAGTTGACTCTGTAGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCTAGATTAATGTCACAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACTACGCCAGGTGGCCGAGCAT
TAAAATTCTATAGTTCTGTAAGATTGGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACAAAAATCAAAGTTGTAAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTATGGTCAAGGAAT
TTCTAAAGAAGGTGAATTAATTGACTTAGGTGTTGAAAACGATATCGTTGATAAATCTGGCGCTTGGTATTCTTACAACG
GCGACCGAATGGGTCAAGGTAAAGAAAATGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGTGAAAAATTAGGAATATTTGATGGTGACGTTGAAGAAACAGATGCTGAAGAGGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.