Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMXYU_RS14280 Genome accession   NZ_CP180551
Coordinates   3054548..3055591 (-) Length   347 a.a.
NCBI ID   WP_415882421.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD48_11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3049548..3060591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYU_RS14260 (ACMXYU_14260) csrA 3049575..3049763 (-) 189 WP_415882418.1 carbon storage regulator CsrA -
  ACMXYU_RS14265 (ACMXYU_14265) - 3049914..3051149 (-) 1236 WP_415899197.1 aspartate kinase -
  ACMXYU_RS14270 (ACMXYU_14270) alaS 3051166..3053721 (-) 2556 WP_415901130.1 alanine--tRNA ligase -
  ACMXYU_RS14275 (ACMXYU_14275) - 3054015..3054479 (-) 465 WP_415899198.1 regulatory protein RecX -
  ACMXYU_RS14280 (ACMXYU_14280) recA 3054548..3055591 (-) 1044 WP_415882421.1 recombinase RecA Machinery gene
  ACMXYU_RS14285 (ACMXYU_14285) pncC 3055697..3056173 (-) 477 WP_415899199.1 nicotinamide-nucleotide amidase -
  ACMXYU_RS14290 (ACMXYU_14290) mutS 3056283..3058847 (+) 2565 WP_415899200.1 DNA mismatch repair protein MutS -
  ACMXYU_RS14295 (ACMXYU_14295) rpoS 3058906..3059922 (-) 1017 WP_415899201.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37440.64 Da        Isoelectric Point: 4.8043

>NTDB_id=1096497 ACMXYU_RS14280 WP_415882421.1 3054548..3055591(-) (recA) [Neptuniibacter sp. QD48_11]
MDANRKKALDAALGQIERQFGKGAVMRMGDQPREAIPSVSTGSLGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQVVA
EAQKQGKTCAFVDAEHALDPIYAEKLGVDVDSLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTGNVKSSNCLLVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKKGDEVVGNE
TRVKVVKNKVSPPFRQAEFQIMYGEGIYHMGEVIDLGVKEGLVDKSGAWYAYNGDKIGQGKANASKFLEENPEIANEIET
ELRNRLLSTPAPKEDDAEDKTESLDLI

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1096497 ACMXYU_RS14280 WP_415882421.1 3054548..3055591(-) (recA) [Neptuniibacter sp. QD48_11]
ATGGACGCAAATCGCAAAAAAGCATTAGACGCAGCGTTAGGTCAAATTGAAAGGCAGTTTGGTAAAGGCGCAGTGATGCG
TATGGGGGATCAGCCTCGTGAAGCGATTCCATCTGTTTCTACTGGCTCCCTTGGTCTAGATATCGCGCTTGGCATAGGCG
GGTTGCCGTATGGCCGTATCGTTGAAATTTATGGTCCTGAATCATCTGGTAAAACAACCCTGACATTACAGGTTGTAGCG
GAAGCTCAGAAGCAGGGTAAAACTTGTGCCTTCGTTGATGCTGAGCATGCACTAGATCCTATTTATGCAGAGAAACTAGG
TGTAGATGTAGATAGCCTGCTGGTTTCTCAGCCGGATACAGGTGAGCAGGCGTTAGAAATTACAGATATGCTAGTTCGCT
CTAACGCAGTTGATGTAATTATCGTCGACTCTGTAGCTGCTTTGACGCCGAAGGCCGAGATCGAAGGTGATATGGGTGAT
TCCCATGTTGGTCTTCAGGCTCGTTTGATGTCTCAGGCGCTACGTAAGTTGACGGGTAATGTTAAGAGCTCTAACTGCTT
GTTGGTATTCATTAACCAGATTCGTATGAAGATTGGGGTTATGTTTGGTAACCCTGAGACTACAACGGGTGGTAATGCGC
TTAAATTCTATTCATCTGTTCGTCTAGACATCCGCCGCACTGGTGCGGTTAAGAAAGGTGATGAGGTCGTTGGTAACGAG
ACGCGCGTGAAGGTTGTGAAGAACAAAGTTTCACCGCCGTTCCGTCAGGCTGAGTTCCAGATTATGTATGGTGAAGGTAT
CTACCATATGGGTGAAGTTATCGACCTAGGTGTTAAAGAGGGCTTAGTTGATAAGTCGGGTGCTTGGTATGCCTACAATG
GCGATAAGATTGGTCAGGGTAAGGCTAATGCATCTAAATTCTTGGAAGAAAACCCTGAGATTGCGAATGAAATTGAAACA
GAACTTCGTAATCGCTTGCTTTCGACGCCTGCACCGAAAGAAGATGACGCTGAAGATAAAACTGAAAGTCTAGATCTAAT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

83.384

95.389

0.795
  recA Vibrio cholerae strain A1552

74.695

94.524

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.524

0.706
  recA Acinetobacter baylyi ADP1

71.637

98.559

0.706
  recA Glaesserella parasuis strain SC1401

74.233

93.948

0.697
  recA Acinetobacter baumannii D1279779

70.468

98.559

0.695
  recA Neisseria gonorrhoeae MS11

72.84

93.372

0.68
  recA Neisseria gonorrhoeae MS11

72.84

93.372

0.68
  recA Neisseria gonorrhoeae strain FA1090

72.84

93.372

0.68
  recA Ralstonia pseudosolanacearum GMI1000

73.016

90.778

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

94.236

0.62
  recA Helicobacter pylori strain NCTC11637

61.652

97.695

0.602
  recA Helicobacter pylori 26695

61.652

97.695

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

92.507

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.145

95.677

0.585
  recA Streptococcus mutans UA159

58.601

98.847

0.579
  recA Streptococcus pneumoniae Rx1

56.936

99.712

0.568
  recA Streptococcus pneumoniae D39

56.936

99.712

0.568
  recA Streptococcus pneumoniae R6

56.936

99.712

0.568
  recA Streptococcus pneumoniae TIGR4

56.936

99.712

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

57.143

98.847

0.565
  recA Streptococcus mitis NCTC 12261

58.769

93.66

0.55
  recA Streptococcus mitis SK321

58.462

93.66

0.548
  recA Streptococcus pyogenes NZ131

58.282

93.948

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.231

93.66

0.536
  recA Lactococcus lactis subsp. cremoris KW2

56.615

93.66

0.53

Multiple sequence alignment