Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMXYN_RS15015 Genome accession   NZ_CP180545
Coordinates   3303335..3304378 (-) Length   347 a.a.
NCBI ID   WP_415892532.1    Uniprot ID   -
Organism   Neptuniibacter sp. PT8_73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3301928..3310175 3303335..3304378 within 0


Gene organization within MGE regions


Location: 3301928..3310175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYN_RS15010 (ACMXYN_15010) - 3302802..3303266 (-) 465 WP_415892531.1 regulatory protein RecX -
  ACMXYN_RS15015 (ACMXYN_15015) recA 3303335..3304378 (-) 1044 WP_415892532.1 recombinase RecA Machinery gene
  ACMXYN_RS15020 (ACMXYN_15020) pncC 3304485..3304961 (-) 477 WP_415892533.1 nicotinamide-nucleotide amidase -
  ACMXYN_RS15025 (ACMXYN_15025) - 3305356..3306516 (+) 1161 WP_415892534.1 hypothetical protein -
  ACMXYN_RS15030 (ACMXYN_15030) - 3306595..3306747 (+) 153 WP_415892535.1 helix-turn-helix transcriptional regulator -
  ACMXYN_RS15035 (ACMXYN_15035) - 3306817..3307386 (+) 570 WP_415892536.1 hypothetical protein -
  ACMXYN_RS15040 (ACMXYN_15040) - 3307458..3308450 (+) 993 WP_415892537.1 hypothetical protein -
  ACMXYN_RS15045 (ACMXYN_15045) - 3308489..3309112 (-) 624 WP_415892538.1 hypothetical protein -
  ACMXYN_RS15050 (ACMXYN_15050) - 3309109..3310029 (-) 921 WP_415892539.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37398.56 Da        Isoelectric Point: 4.7963

>NTDB_id=1096382 ACMXYN_RS15015 WP_415892532.1 3303335..3304378(-) (recA) [Neptuniibacter sp. PT8_73]
MDANRKKALDAALGQIERQFGKGAVMRMGDQPREAIPSVSTGSLGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQVVA
EAQKQGKTCAFVDAEHALDPIYAEKLGVDVDSLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTGNVKSSNCLLVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKKGDEVVGNE
TRVKVVKNKVSPPFRQAEFQIMYGEGIYHMGEVIDLGVKEGLVDKSGAWYAYNGDKIGQGKANASKFLEENPEIANEIET
ELRNRLLSTPTPNEGDAEDKTESLDLI

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1096382 ACMXYN_RS15015 WP_415892532.1 3303335..3304378(-) (recA) [Neptuniibacter sp. PT8_73]
ATGGACGCAAATCGCAAAAAAGCATTAGACGCAGCGTTAGGTCAAATTGAAAGGCAGTTTGGTAAAGGCGCAGTGATGCG
TATGGGGGATCAGCCTCGTGAAGCGATTCCATCTGTTTCTACTGGCTCCCTTGGTCTAGATATCGCACTTGGCATAGGCG
GATTGCCGTATGGCCGTATCGTTGAAATTTATGGTCCTGAATCATCTGGTAAAACAACCCTGACATTACAGGTTGTAGCG
GAAGCTCAGAAGCAGGGTAAAACCTGTGCCTTCGTTGATGCTGAGCATGCGCTAGATCCTATTTATGCAGAGAAGCTAGG
CGTTGATGTAGATAGCCTGCTGGTTTCACAGCCAGATACAGGTGAACAAGCGCTAGAAATTACAGATATGCTAGTTCGCT
CTAACGCAGTTGATGTAATTATCGTCGATTCTGTAGCTGCTTTGACTCCGAAAGCAGAGATTGAAGGTGATATGGGTGAT
TCTCATGTTGGTCTTCAGGCTCGTTTGATGTCTCAAGCGCTACGTAAGTTGACGGGTAATGTTAAGAGCTCCAACTGCTT
ATTAGTATTCATTAACCAAATTCGTATGAAGATTGGGGTTATGTTTGGTAACCCTGAGACGACTACAGGTGGTAATGCGC
TTAAATTCTACTCATCTGTTCGTTTGGATATTCGCCGTACCGGTGCTGTTAAGAAGGGTGATGAGGTCGTTGGTAACGAG
ACGCGTGTGAAGGTTGTTAAGAACAAGGTTTCACCGCCGTTCCGTCAGGCTGAGTTCCAGATTATGTATGGTGAAGGTAT
CTACCATATGGGCGAAGTTATCGACCTAGGTGTTAAAGAAGGTTTGGTTGATAAGTCGGGTGCTTGGTATGCCTACAATG
GCGATAAGATTGGTCAGGGTAAGGCTAATGCATCTAAGTTCTTGGAAGAAAATCCTGAGATTGCGAATGAAATCGAGACA
GAACTACGTAATCGCTTGCTTTCAACTCCGACACCTAATGAAGGGGACGCCGAAGACAAAACTGAAAGCCTTGATCTGAT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

83.587

94.813

0.793
  recA Vibrio cholerae strain A1552

74.695

94.524

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.524

0.706
  recA Acinetobacter baylyi ADP1

71.345

98.559

0.703
  recA Glaesserella parasuis strain SC1401

74.233

93.948

0.697
  recA Acinetobacter baumannii D1279779

70.76

98.559

0.697
  recA Neisseria gonorrhoeae MS11

72.84

93.372

0.68
  recA Neisseria gonorrhoeae MS11

72.84

93.372

0.68
  recA Neisseria gonorrhoeae strain FA1090

72.84

93.372

0.68
  recA Ralstonia pseudosolanacearum GMI1000

73.016

90.778

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

94.236

0.62
  recA Helicobacter pylori strain NCTC11637

61.652

97.695

0.602
  recA Helicobacter pylori 26695

61.652

97.695

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

63.777

93.084

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.145

95.677

0.585
  recA Streptococcus pneumoniae Rx1

56.936

99.712

0.568
  recA Streptococcus pneumoniae D39

56.936

99.712

0.568
  recA Streptococcus pneumoniae R6

56.936

99.712

0.568
  recA Streptococcus pneumoniae TIGR4

56.936

99.712

0.568
  recA Streptococcus mutans UA159

60.681

93.084

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

56.851

98.847

0.562
  recA Streptococcus mitis NCTC 12261

58.769

93.66

0.55
  recA Streptococcus mitis SK321

58.462

93.66

0.548
  recA Streptococcus pyogenes NZ131

58.282

93.948

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.231

93.66

0.536
  recA Lactococcus lactis subsp. cremoris KW2

56.615

93.66

0.53

Multiple sequence alignment