Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMXYQ_RS15070 Genome accession   NZ_CP180544
Coordinates   3298488..3299531 (-) Length   347 a.a.
NCBI ID   WP_415895169.1    Uniprot ID   -
Organism   Neptuniibacter sp. PT34_22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3293488..3304531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYQ_RS15050 (ACMXYQ_15050) csrA 3293515..3293703 (-) 189 WP_415882418.1 carbon storage regulator CsrA -
  ACMXYQ_RS15055 (ACMXYQ_15055) - 3293854..3295089 (-) 1236 WP_415892530.1 aspartate kinase -
  ACMXYQ_RS15060 (ACMXYQ_15060) alaS 3295106..3297661 (-) 2556 WP_415896228.1 alanine--tRNA ligase -
  ACMXYQ_RS15065 (ACMXYQ_15065) - 3297955..3298419 (-) 465 WP_415892531.1 regulatory protein RecX -
  ACMXYQ_RS15070 (ACMXYQ_15070) recA 3298488..3299531 (-) 1044 WP_415895169.1 recombinase RecA Machinery gene
  ACMXYQ_RS15075 (ACMXYQ_15075) pncC 3299638..3300114 (-) 477 WP_415895170.1 nicotinamide-nucleotide amidase -
  ACMXYQ_RS15080 (ACMXYQ_15080) mutS 3300224..3302788 (+) 2565 WP_415895171.1 DNA mismatch repair protein MutS -
  ACMXYQ_RS15085 (ACMXYQ_15085) rpoS 3302848..3303864 (-) 1017 WP_415892558.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37397.57 Da        Isoelectric Point: 4.8604

>NTDB_id=1096359 ACMXYQ_RS15070 WP_415895169.1 3298488..3299531(-) (recA) [Neptuniibacter sp. PT34_22]
MDANRKKALDAALGQIERQFGKGAVMRMGDQPREAIPSVSTGSLGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQVVA
EAQKQGKTCAFVDAEHALDPIYAEKLGVDVDSLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTGNVKSSNCLLVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKKGDEVVGNE
TRVKVVKNKVSPPFRQAEFQIMYGEGIYHMGEVIDLGVKEGLVDKSGAWYAYNGDKIGQGKANASKFLEENPEIANEIET
ELRNRLLSTPTPNQGDAEDKTESLDLI

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1096359 ACMXYQ_RS15070 WP_415895169.1 3298488..3299531(-) (recA) [Neptuniibacter sp. PT34_22]
ATGGACGCAAATCGCAAAAAAGCATTAGACGCAGCGTTAGGTCAAATTGAAAGGCAGTTTGGTAAAGGCGCAGTGATGCG
TATGGGGGATCAGCCTCGTGAAGCGATTCCATCTGTTTCTACTGGCTCCCTTGGTCTAGATATCGCACTTGGCATAGGCG
GATTGCCGTATGGCCGTATCGTTGAAATTTATGGTCCTGAATCATCTGGTAAAACAACCCTGACATTACAGGTTGTAGCG
GAAGCTCAGAAGCAGGGTAAAACCTGTGCCTTCGTTGATGCTGAGCATGCGCTAGATCCTATTTATGCAGAGAAGCTAGG
CGTTGATGTAGATAGCCTGCTGGTTTCACAGCCAGATACAGGTGAACAAGCGCTAGAAATTACAGATATGCTAGTTCGCT
CTAACGCAGTTGATGTAATTATCGTCGATTCTGTAGCTGCTTTGACTCCGAAAGCAGAGATTGAAGGTGATATGGGTGAT
TCTCATGTTGGTCTTCAGGCTCGTTTGATGTCTCAAGCGCTACGTAAGTTGACGGGTAATGTTAAGAGCTCCAACTGCTT
ATTAGTATTCATTAACCAAATTCGTATGAAGATTGGGGTTATGTTTGGTAACCCTGAGACGACTACAGGTGGTAATGCGC
TTAAATTCTACTCATCTGTTCGTTTGGATATTCGCCGTACCGGTGCTGTTAAGAAGGGTGATGAGGTCGTTGGTAACGAG
ACGCGTGTGAAGGTTGTTAAGAACAAGGTTTCACCGCCGTTCCGTCAGGCTGAGTTCCAGATTATGTATGGTGAAGGTAT
CTACCATATGGGCGAAGTTATCGACCTAGGTGTTAAAGAAGGTTTGGTTGATAAGTCGGGTGCTTGGTATGCCTACAATG
GCGATAAGATTGGTCAGGGTAAGGCTAATGCATCTAAGTTCTTGGAAGAAAATCCTGAGATTGCGAATGAAATCGAGACA
GAACTACGTAATCGCTTGCTTTCAACTCCGACACCTAATCAAGGGGACGCCGAAGACAAAACTGAAAGCCTTGATCTGAT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

83.587

94.813

0.793
  recA Vibrio cholerae strain A1552

74.695

94.524

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.524

0.706
  recA Acinetobacter baylyi ADP1

71.637

98.559

0.706
  recA Glaesserella parasuis strain SC1401

74.233

93.948

0.697
  recA Acinetobacter baumannii D1279779

70.76

98.559

0.697
  recA Neisseria gonorrhoeae MS11

72.84

93.372

0.68
  recA Neisseria gonorrhoeae MS11

72.84

93.372

0.68
  recA Neisseria gonorrhoeae strain FA1090

72.84

93.372

0.68
  recA Ralstonia pseudosolanacearum GMI1000

73.016

90.778

0.663
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

94.236

0.62
  recA Helicobacter pylori strain NCTC11637

61.357

97.695

0.599
  recA Helicobacter pylori 26695

61.357

97.695

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

63.777

93.084

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.145

95.677

0.585
  recA Streptococcus mutans UA159

60.681

93.084

0.565
  recA Streptococcus pneumoniae Rx1

56.647

99.712

0.565
  recA Streptococcus pneumoniae D39

56.647

99.712

0.565
  recA Streptococcus pneumoniae R6

56.647

99.712

0.565
  recA Streptococcus pneumoniae TIGR4

56.647

99.712

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.188

91.931

0.553
  recA Streptococcus mitis NCTC 12261

58.769

93.66

0.55
  recA Streptococcus mitis SK321

58.462

93.66

0.548
  recA Streptococcus pyogenes NZ131

58.282

93.948

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.231

93.66

0.536
  recA Lactococcus lactis subsp. cremoris KW2

56.615

93.66

0.53

Multiple sequence alignment