Detailed information NTG1096072

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: ACMXYJ_RS07845
• Genome accession: NZ_CP180480
• Coordinates: 1698243..1699295 (+)
• Length: 350 a.a.
• NCBI ID: WP_150709927.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LT1P18
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1674552..1699771	1698243..1699295	within	0

Gene organization within MGE regions

Location: 1674552..1699771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYJ_RS07710	-	1674552..1675409 (+)	858	WP_415759334.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACMXYJ_RS07715	rpoS	1675515..1676522 (+)	1008	WP_008154012.1	RNA polymerase sigma factor RpoS	-
ACMXYJ_RS07720	fdxA	1677007..1677330 (-)	324	WP_008154011.1	ferredoxin FdxA	-
ACMXYJ_RS07725	mutS	1677473..1680052 (-)	2580	WP_008154009.1	DNA mismatch repair protein MutS	-
ACMXYJ_RS07730	-	1680264..1680998 (+)	735	WP_415760690.1	XRE family transcriptional regulator	-
ACMXYJ_RS07735	-	1681507..1681854 (+)	348	WP_056739181.1	phage holin family protein	-
ACMXYJ_RS07740	-	1681989..1682573 (+)	585	WP_415759335.1	hypothetical protein	-
ACMXYJ_RS07745	-	1682570..1682752 (+)	183	WP_003198311.1	DUF2635 domain-containing protein	-
ACMXYJ_RS07750	-	1682752..1684248 (+)	1497	WP_415759336.1	phage tail sheath subtilisin-like domain-containing protein	-
ACMXYJ_RS07755	-	1684316..1684663 (+)	348	WP_056739184.1	phage tail tube protein	-
ACMXYJ_RS07760	-	1684660..1684956 (+)	297	WP_046054588.1	phage tail assembly protein	-
ACMXYJ_RS07765	-	1685087..1686769 (+)	1683	WP_415759337.1	phage tail protein	-
ACMXYJ_RS07770	-	1686756..1687994 (+)	1239	WP_415759338.1	DNA circularization protein	-
ACMXYJ_RS07775	-	1687998..1689038 (+)	1041	WP_415759339.1	phage baseplate assembly protein	-
ACMXYJ_RS07780	-	1689075..1689584 (+)	510	WP_415759340.1	phage baseplate assembly protein V	-
ACMXYJ_RS07785	-	1689584..1689982 (+)	399	WP_415759341.1	phage GP46 family protein	-
ACMXYJ_RS07790	-	1689972..1691012 (+)	1041	WP_415759343.1	baseplate J/gp47 family protein	-
ACMXYJ_RS07795	-	1691003..1691602 (+)	600	WP_415759345.1	YmfQ family protein	-
ACMXYJ_RS07800	-	1691614..1692765 (+)	1152	WP_415759347.1	phage tail protein	-
ACMXYJ_RS07805	-	1692762..1693277 (+)	516	WP_415759348.1	phage tail protein	-
ACMXYJ_RS07810	-	1693412..1694452 (+)	1041	WP_415759349.1	phage tail protein	-
ACMXYJ_RS07815	-	1694460..1695032 (+)	573	WP_415759350.1	tail fiber assembly protein	-
ACMXYJ_RS07820	-	1695118..1696014 (+)	897	WP_415759351.1	phage tail protein	-
ACMXYJ_RS07825	-	1696015..1696461 (+)	447	WP_415759352.1	phage tail assembly chaperone	-
ACMXYJ_RS07830	-	1696497..1697060 (+)	564	WP_415759353.1	glycoside hydrolase family 19 protein	-
ACMXYJ_RS07835	-	1697042..1697578 (+)	537	WP_415759354.1	lysis protein	-
ACMXYJ_RS07840	-	1697659..1698159 (+)	501	WP_415759355.1	CinA family protein	-
ACMXYJ_RS07845	recA	1698243..1699295 (+)	1053	WP_150709927.1	recombinase RecA	Machinery gene
ACMXYJ_RS07850	recX	1699304..1699771 (+)	468	WP_046046277.1	recombination regulator RecX	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 37326.93 Da
• Isoelectric Point: 5.8749

>NTDB_id=1096072 ACMXYJ_RS07845 WP_150709927.1 1698243..1699295(+) (recA) [Pseudomonas sp. LT1P18]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAKKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI

Nucleotide

• Length: 1053 bp

>NTDB_id=1096072 ACMXYJ_RS07845 WP_150709927.1 1698243..1699295(+) (recA) [Pseudomonas sp. LT1P18]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACACTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGATGCTGAACACGCCCTCGACCCTGAATACGCCGGAAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAACAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCTGCTCTGGTTCCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGACGAGGTTGTTGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCTGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGTGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTTGAGAAGTCCGGCGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCTAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATCGCCAAGAAACTTGAGAAG
CAGCTGCGCGACAAGTTGCTGACTCCAGCGCCGGACGTCAAAGCATCGCCAGTCAAAGAGACTGCTGATGACCTGGCTGA
CGCTGATATCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	88.286	100	0.883
recA	Vibrio cholerae O1 biovar El Tor strain E7946	72.754	98.571	0.717
recA	Vibrio cholerae strain A1552	72.754	98.571	0.717
recA	Acinetobacter baylyi ADP1	74.702	96	0.717
recA	Glaesserella parasuis strain SC1401	70.725	98.571	0.697
recA	Acinetobacter baumannii D1279779	73.494	94.857	0.697
recA	Ralstonia pseudosolanacearum GMI1000	69.617	96.857	0.674
recA	Neisseria gonorrhoeae MS11	71.296	92.571	0.66
recA	Neisseria gonorrhoeae MS11	71.296	92.571	0.66
recA	Neisseria gonorrhoeae strain FA1090	71.296	92.571	0.66
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.526	93.429	0.603
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.934	94.571	0.586
recA	Helicobacter pylori strain NCTC11637	58.96	98.857	0.583
recA	Helicobacter pylori 26695	58.382	98.857	0.577
recA	Bacillus subtilis subsp. subtilis str. 168	61.059	91.714	0.56
recA	Streptococcus mutans UA159	59.692	92.857	0.554
recA	Streptococcus pneumoniae TIGR4	58.589	93.143	0.546
recA	Streptococcus pneumoniae Rx1	58.589	93.143	0.546
recA	Streptococcus pneumoniae D39	58.589	93.143	0.546
recA	Streptococcus pneumoniae R6	58.589	93.143	0.546
recA	Streptococcus mitis NCTC 12261	58.824	92.286	0.543
recA	Streptococcus mitis SK321	58.514	92.286	0.54
recA	Streptococcus pyogenes NZ131	57.622	93.714	0.54
recA	Latilactobacillus sakei subsp. sakei 23K	58.255	91.714	0.534
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	56.481	92.571	0.523
recA	Lactococcus lactis subsp. cremoris KW2	56.347	92.286	0.52