Detailed information NTG1096018

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: ACMYQ1_RS16050
• Genome accession: NZ_CP180478
• Coordinates: 3685919..3686986 (-)
• Length: 355 a.a.
• NCBI ID: WP_105251812.1
• Uniprot ID: -
• Organism: Shewanella oncorhynchi strain XWfb1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3680919..3691986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMYQ1_RS16035 (ACMYQ1_16035)	-	3681221..3682477 (-)	1257	WP_168822957.1	aspartate kinase	-
ACMYQ1_RS16040 (ACMYQ1_16040)	alaS	3682487..3685111 (-)	2625	WP_168822955.1	alanine--tRNA ligase	-
ACMYQ1_RS16045 (ACMYQ1_16045)	-	3685431..3685901 (-)	471	WP_375539965.1	regulatory protein RecX	-
ACMYQ1_RS16050 (ACMYQ1_16050)	recA	3685919..3686986 (-)	1068	WP_105251812.1	recombinase RecA	Machinery gene
ACMYQ1_RS16055 (ACMYQ1_16055)	mutS	3687389..3689959 (+)	2571	WP_415775153.1	DNA mismatch repair protein MutS	-
ACMYQ1_RS16060 (ACMYQ1_16060)	rpoS	3690092..3691072 (-)	981	WP_028761361.1	RNA polymerase sigma factor RpoS	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 37926.45 Da
• Isoelectric Point: 4.9553

>NTDB_id=1096018 ACMYQ1_RS16050 WP_105251812.1 3685919..3686986(-) (recA) [Shewanella oncorhynchi strain XWfb1]
MKVDPNKEKALAAVLIQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSALAAKADDSTEDNIDLETGEVF

Nucleotide

• Length: 1068 bp

>NTDB_id=1096018 ACMYQ1_RS16050 WP_105251812.1 3685919..3686986(-) (recA) [Shewanella oncorhynchi strain XWfb1]
ATGAAGGTCGATCCAAATAAAGAGAAAGCACTTGCTGCGGTATTGATCCAAATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGATCGCTCTATGGATGTTGAGACCATTTCTACCGGTTCTCTGTCTCTGGACGTTGCTTTAGGTG
CTGGCGGTTTGCCAATGGGTCGTATCGTTGAGATCTATGGTCCTGAATCATCAGGTAAAACAACACTGACTTTAGAAGTT
ATTGCCGCAGCGCAACGTGAAGGCAAGACCTGTGCCTTTATCGATGCAGAGCATGCACTAGACCCTATTTATGCTAAAAA
ATTGGGCGTAGATATTGATAACCTGCTGTGTTCGCAACCGGATACCGGCGAGCAAGCGCTTGAGATTTGTGATGCTTTAA
CTCGCTCAGGTGCTGTTGACGTTATCGTAGTCGACTCAGTGGCGGCATTAACGCCTAAAGCTGAAATCGAAGGCGAAATT
GGTGATTCTCACATGGGCCTAGCGGCGCGTATGATGAGCCAAGCTATGCGTAAACTTGCGGGTAACTTAAAGCAATCTAA
CACCTTACTTATCTTCATCAACCAAATTCGGATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACTACAACCGGTGGTA
ATGCGCTGAAGTTTTATGCTTCTGTTCGCCTAGACATTCGCCGCACTGGTGCCATTAAAGACGGCGATGAAGTGGTCGGT
AACGAAACTCGCGTTAAAGTGGTGAAAAACAAGGTTGCAGCGCCGTTTAAGCAAGCTGAGTTCCAAATCCTTTATGGCCA
AGGTATTAACCGTACTGGTGAGTTAGTTGACTTAGGCGTAGCCCATAAGTTGATTGAAAAAGCGGGCGCTTGGTACAGTT
ATAAAGGTGATAAAATCGGCCAAGGTCGTGCTAATGCTGGCAAATATCTGACTGAAAACCCTGCTATTGCTGCTGAAATT
GACAAGACGCTACGTGAGTTGCTTTTAAGTAATCCGAGTGCCTTGGCTGCCAAAGCTGATGATAGTACTGAGGACAATAT
TGATTTAGAGACAGGCGAAGTATTCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	81.25	99.155	0.806
recA	Vibrio cholerae O1 biovar El Tor strain E7946	81.25	99.155	0.806
recA	Pseudomonas stutzeri DSM 10701	74.924	92.113	0.69
recA	Acinetobacter baylyi ADP1	70.317	97.746	0.687
recA	Glaesserella parasuis strain SC1401	70.029	97.746	0.685
recA	Acinetobacter baumannii D1279779	69.054	98.31	0.679
recA	Neisseria gonorrhoeae MS11	65.903	98.31	0.648
recA	Neisseria gonorrhoeae MS11	65.903	98.31	0.648
recA	Neisseria gonorrhoeae strain FA1090	65.903	98.31	0.648
recA	Ralstonia pseudosolanacearum GMI1000	69.207	92.394	0.639
recA	Streptococcus mitis SK321	59.229	100	0.606
recA	Streptococcus pneumoniae D39	63.72	92.394	0.589
recA	Streptococcus pyogenes NZ131	58.056	100	0.589
recA	Streptococcus pneumoniae TIGR4	63.72	92.394	0.589
recA	Streptococcus pneumoniae R6	63.72	92.394	0.589
recA	Streptococcus pneumoniae Rx1	63.72	92.394	0.589
recA	Streptococcus mitis NCTC 12261	63.11	92.394	0.583
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.562	93.803	0.577
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.346	91.268	0.569
recA	Streptococcus mutans UA159	61.585	92.394	0.569
recA	Bacillus subtilis subsp. subtilis str. 168	62.617	90.423	0.566
recA	Helicobacter pylori strain NCTC11637	60.542	93.521	0.566
recA	Helicobacter pylori 26695	60.241	93.521	0.563
recA	Lactococcus lactis subsp. cremoris KW2	60.061	92.394	0.555
recA	Latilactobacillus sakei subsp. sakei 23K	61.755	89.859	0.555
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.27	88.732	0.544