Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLHDG_RS13370 Genome accession   NZ_CP180410
Coordinates   2712281..2713318 (-) Length   345 a.a.
NCBI ID   WP_415406744.1    Uniprot ID   -
Organism   Sulfurovum sp. CS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2707281..2718318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLHDG_RS13345 (ACLHDG_13340) - 2707502..2708350 (+) 849 WP_415406739.1 biotin synthase -
  ACLHDG_RS13350 (ACLHDG_13345) - 2708337..2709494 (+) 1158 WP_415406740.1 cation:proton antiporter -
  ACLHDG_RS13355 (ACLHDG_13350) - 2709491..2710261 (-) 771 WP_415406741.1 hypothetical protein -
  ACLHDG_RS13360 (ACLHDG_13355) - 2710370..2710621 (-) 252 WP_415406742.1 hypothetical protein -
  ACLHDG_RS13365 (ACLHDG_13360) eno 2710634..2711908 (-) 1275 WP_415406743.1 phosphopyruvate hydratase -
  ACLHDG_RS13370 (ACLHDG_13365) recA 2712281..2713318 (-) 1038 WP_415406744.1 recombinase RecA Machinery gene
  ACLHDG_RS13375 (ACLHDG_13370) - 2713527..2714393 (+) 867 WP_415406745.1 menaquinone biosynthesis family protein -
  ACLHDG_RS13380 (ACLHDG_13375) - 2714394..2715170 (+) 777 WP_415406746.1 UDP-N-acetylmuramate dehydrogenase -
  ACLHDG_RS13385 (ACLHDG_13380) - 2715196..2715696 (-) 501 WP_415406747.1 DUF1566 domain-containing protein -
  ACLHDG_RS13390 (ACLHDG_13385) - 2715783..2716376 (-) 594 WP_415406748.1 L,D-transpeptidase family protein -
  ACLHDG_RS13395 (ACLHDG_13390) - 2716400..2716699 (-) 300 WP_415406749.1 hypothetical protein -
  ACLHDG_RS13400 (ACLHDG_13395) - 2716797..2717357 (-) 561 WP_415406750.1 L,D-transpeptidase family protein -
  ACLHDG_RS13405 (ACLHDG_13400) tpx 2717508..2718023 (-) 516 WP_415406751.1 thiol peroxidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37304.85 Da        Isoelectric Point: 4.8546

>NTDB_id=1095753 ACLHDG_RS13370 WP_415406744.1 2712281..2713318(-) (recA) [Sulfurovum sp. CS9]
MAMDANKQKALDMAIKQIDKTFGKGTLMRLGDKEFEPIAAISTGSLGLDMALGIGGIPQGRIIEIYGPESSGKTTLALQT
IASAQKEDMVCAFIDAEHALDVVYAKNLGVDTDNLLVSQPDFGEQALDVLETLTRSGAVDLIVVDSVAALTPKSEIEGDM
GDTHVGLQARLMSQALRKLTAILHKTNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYCSVRIDVRRIATLKQGESSI
GNRVKAKVVKNKVAPPFRQAEFDIMFGEGISFVGELIDYGVKMDIIDKSGAWFSYGSEKLGQGKENSKITIKENPEMMAE
IEAKIKEALGFGESLTVDESEMQDH

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1095753 ACLHDG_RS13370 WP_415406744.1 2712281..2713318(-) (recA) [Sulfurovum sp. CS9]
ATGGCAATGGACGCAAACAAACAAAAAGCACTTGATATGGCGATCAAACAGATAGATAAAACGTTTGGTAAAGGTACACT
TATGAGACTGGGAGATAAGGAGTTTGAACCTATTGCTGCTATTTCTACAGGTTCTCTTGGACTAGATATGGCTTTGGGAA
TTGGTGGTATTCCTCAAGGACGTATTATAGAGATTTATGGTCCTGAATCCTCAGGAAAAACTACATTGGCACTGCAAACG
ATCGCATCTGCACAAAAAGAGGATATGGTATGTGCATTTATCGATGCAGAACACGCTTTAGATGTTGTTTACGCGAAAAA
CTTAGGTGTTGATACAGACAATCTACTTGTTTCTCAGCCAGACTTCGGTGAGCAGGCACTTGATGTGCTTGAAACTTTGA
CTCGCTCAGGCGCAGTTGATTTGATCGTTGTCGATTCTGTTGCAGCACTTACACCAAAAAGTGAAATAGAAGGGGATATG
GGTGATACACACGTAGGACTTCAAGCAAGACTTATGTCACAGGCACTTCGTAAACTGACAGCAATTTTACACAAAACAAA
CACAACAGTGATCTTTATCAATCAAATTCGTATGAAGATCGGTACCATGGGTTATGGTTCTCCTGAAACAACTACGGGTG
GTAATGCATTGAAGTTTTACTGTTCGGTAAGAATTGATGTGCGTCGTATAGCAACGCTTAAGCAAGGTGAATCTTCTATT
GGTAACCGTGTGAAAGCCAAAGTTGTGAAAAACAAAGTGGCCCCTCCATTTAGACAAGCAGAGTTTGATATTATGTTTGG
TGAAGGAATCTCTTTTGTGGGTGAACTGATAGACTATGGTGTAAAAATGGATATTATAGACAAATCAGGAGCCTGGTTTA
GCTATGGTAGTGAAAAATTAGGACAGGGTAAAGAAAATTCAAAAATCACTATTAAAGAAAACCCAGAAATGATGGCGGAA
ATTGAAGCTAAAATTAAAGAAGCACTTGGCTTTGGTGAAAGTTTGACTGTAGATGAAAGTGAGATGCAAGACCATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.508

95.362

0.739
  recA Helicobacter pylori strain NCTC11637

76.119

97.101

0.739
  recA Helicobacter pylori 26695

75.821

97.101

0.736
  recA Neisseria gonorrhoeae MS11

66.154

94.203

0.623
  recA Neisseria gonorrhoeae MS11

66.154

94.203

0.623
  recA Neisseria gonorrhoeae strain FA1090

66.154

94.203

0.623
  recA Acinetobacter baylyi ADP1

65.138

94.783

0.617
  recA Glaesserella parasuis strain SC1401

65.635

93.623

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.134

95.362

0.612
  recA Acinetobacter baumannii D1279779

64.526

94.783

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

95.942

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.609

94.783

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

94.783

0.603
  recA Pseudomonas stutzeri DSM 10701

63.609

94.783

0.603
  recA Vibrio cholerae strain A1552

63.609

94.783

0.603
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

94.783

0.574
  recA Lactococcus lactis subsp. cremoris KW2

57.602

99.13

0.571
  recA Streptococcus pneumoniae Rx1

57.434

99.42

0.571
  recA Streptococcus pneumoniae D39

57.434

99.42

0.571
  recA Streptococcus pneumoniae R6

57.434

99.42

0.571
  recA Streptococcus pneumoniae TIGR4

57.434

99.42

0.571
  recA Streptococcus pyogenes NZ131

59.756

95.072

0.568
  recA Streptococcus mitis NCTC 12261

57.185

98.841

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

58.258

96.522

0.562
  recA Streptococcus mitis SK321

58.61

95.942

0.562
  recA Streptococcus mutans UA159

56.932

98.261

0.559

Multiple sequence alignment