Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLM42_RS09635 Genome accession   NZ_CP180404
Coordinates   1711891..1713003 (+) Length   370 a.a.
NCBI ID   WP_247911836.1    Uniprot ID   -
Organism   Synechococcus sp. W4D4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1706891..1718003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLM42_RS09610 (ACLM42_09610) - 1707590..1708057 (+) 468 WP_247911832.1 NAD(P)H-quinone oxidoreductase subunit N -
  ACLM42_RS09615 (ACLM42_09615) - 1708054..1709070 (+) 1017 WP_415398928.1 LdpA C-terminal domain-containing domain -
  ACLM42_RS09620 (ACLM42_09620) - 1709087..1710769 (+) 1683 WP_415398929.1 AAA family ATPase -
  ACLM42_RS09630 (ACLM42_09630) - 1710990..1711739 (+) 750 WP_247911835.1 HAD family hydrolase -
  ACLM42_RS09635 (ACLM42_09635) recA 1711891..1713003 (+) 1113 WP_247911836.1 recombinase RecA Machinery gene
  ACLM42_RS09640 (ACLM42_09640) - 1713082..1713423 (-) 342 WP_415398930.1 DUF1815 family protein -
  ACLM42_RS09645 (ACLM42_09645) - 1713504..1713746 (-) 243 WP_247911838.1 DUF2839 domain-containing protein -
  ACLM42_RS09650 (ACLM42_09650) - 1713792..1715228 (-) 1437 WP_415398931.1 helicase -
  ACLM42_RS09655 (ACLM42_09655) - 1715270..1716130 (+) 861 WP_415398932.1 prephenate/arogenate dehydrogenase -
  ACLM42_RS09660 (ACLM42_09660) crtD 1716127..1717629 (-) 1503 WP_415398933.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39371.78 Da        Isoelectric Point: 6.7378

>NTDB_id=1095697 ACLM42_RS09635 WP_247911836.1 1711891..1713003(+) (recA) [Synechococcus sp. W4D4]
MPADDKSTSASSPERDKALGLVLNQIERNFGKGSIMRLGDASRMRIETTPTGALTLDLALGGGYPKGRVVEVYGPESSGK
TTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVAALTPR
SEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLK
RGTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEEHGVVVRKGAWYSYEGDNIGQGRDNTITWLEQN
NTEKDAIEVKVRQKLSETTDSLKPVATAAAKLAASGSASSSKEQALPAAS

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1095697 ACLM42_RS09635 WP_247911836.1 1711891..1713003(+) (recA) [Synechococcus sp. W4D4]
ATGCCTGCCGACGACAAGAGCACCAGCGCCTCCAGCCCTGAGCGGGACAAGGCCCTTGGCCTGGTTCTGAACCAAATCGA
GCGCAACTTTGGCAAGGGCTCGATCATGCGCCTGGGGGATGCCTCGCGCATGCGGATCGAGACCACCCCCACCGGCGCCC
TGACCCTCGACCTCGCCCTGGGTGGTGGCTACCCGAAAGGACGGGTTGTGGAGGTCTACGGCCCTGAGAGCTCAGGCAAA
ACCACCCTCACCCTGCACGCCATTGCCGAAGTGCAGCGCCGCGGAGGCGTGGCCGCCTTCGTCGACGCCGAGCACGCCCT
GGACCCGGTCTATGCCGCGGCCCTCGGAGTGGATATCGAGAACCTGCTGGTCTCCCAACCGGACACCGGTGAGATGGCCC
TGGAGATCGTCGACCAACTGGTGCGCTCCGCCGCCGTTGACATCGTTGTGGTGGACTCGGTGGCCGCCCTCACCCCACGC
TCTGAAATCGAGGGCGAGATGGGGGACCTCGCCGTTGGCAGCCAGGCCCGACTGATGAGCCAGGCGATGCGCAAGATCAC
CGGCAACATCGGCAAGTCCGGCTGCACCGTGATCTTCCTGAACCAGCTGCGCCAGAAAATTGGCGTGACCTACGGCAACC
CCGAAACCACGACCGGTGGCAATGCCCTGAAGTTCTATGCCTCGGTGCGCCTTGACATCCGTCGCATCCAGACCCTGAAG
CGCGGCACCGAAGAATTCGGCATCCGCGCCAAGGTGAAGGTGGCCAAAAACAAGGTGGCGCCCCCCTTCCGGATTGCGGA
ATTCGACATCCTCTTTGGCCGCGGGATCAGCACCGTGGGCTGCCTACTGGACCTCGCCGAAGAGCACGGCGTTGTTGTGC
GCAAAGGTGCTTGGTACAGCTACGAGGGCGACAACATCGGCCAAGGGCGTGACAACACCATCACCTGGCTCGAGCAAAAC
AACACCGAGAAAGACGCCATCGAAGTGAAGGTGCGCCAAAAACTCAGTGAAACCACCGATTCGCTGAAGCCCGTTGCCAC
TGCGGCCGCCAAGCTGGCCGCCTCAGGAAGTGCCAGCAGCAGCAAAGAGCAGGCACTGCCAGCCGCCAGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

62.09

90.541

0.562
  recA Ralstonia pseudosolanacearum GMI1000

61.905

90.811

0.562
  recA Acinetobacter baylyi ADP1

63.975

87.027

0.557
  recA Acinetobacter baumannii D1279779

63.077

87.838

0.554
  recA Glaesserella parasuis strain SC1401

60.355

91.351

0.551
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

86.757

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.754

91.081

0.535
  recA Neisseria gonorrhoeae MS11

60.991

87.297

0.532
  recA Neisseria gonorrhoeae MS11

60.991

87.297

0.532
  recA Neisseria gonorrhoeae strain FA1090

60.991

87.297

0.532
  recA Vibrio cholerae strain A1552

61.18

87.027

0.532
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.18

87.027

0.532
  recA Helicobacter pylori strain NCTC11637

59.146

88.649

0.524
  recA Helicobacter pylori 26695

59.146

88.649

0.524
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

86.486

0.514
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.19

86.757

0.514
  recA Streptococcus pyogenes NZ131

52.676

95.946

0.505
  recA Lactococcus lactis subsp. cremoris KW2

56.156

90

0.505
  recA Streptococcus mutans UA159

56.495

89.459

0.505
  recA Streptococcus mitis NCTC 12261

55.556

90

0.5
  recA Streptococcus pneumoniae R6

56.269

88.378

0.497
  recA Streptococcus pneumoniae TIGR4

56.269

88.378

0.497
  recA Streptococcus pneumoniae Rx1

56.269

88.378

0.497
  recA Streptococcus pneumoniae D39

56.269

88.378

0.497
  recA Streptococcus mitis SK321

55.255

90

0.497
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.006

91.081

0.492

Multiple sequence alignment