Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMVP2_RS14230 Genome accession   NZ_CP180355
Coordinates   3292099..3293130 (-) Length   343 a.a.
NCBI ID   WP_416868124.1    Uniprot ID   -
Organism   MAG: Imperialibacter sp. isolate tig00000051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3287099..3298130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVP2_RS14210 (ACMVP2_14210) pheT 3287348..3289765 (+) 2418 WP_416868123.1 phenylalanine--tRNA ligase subunit beta -
  ACMVP2_RS14215 (ACMVP2_14215) - 3289807..3290067 (+) 261 WP_339784985.1 hypothetical protein -
  ACMVP2_RS14220 (ACMVP2_14220) - 3290084..3290371 (+) 288 WP_151996366.1 cell division protein ZapA -
  ACMVP2_RS14225 (ACMVP2_14225) rny 3290458..3292023 (+) 1566 WP_317489544.1 ribonuclease Y -
  ACMVP2_RS14230 (ACMVP2_14230) recA 3292099..3293130 (-) 1032 WP_416868124.1 recombinase RecA Machinery gene
  ACMVP2_RS14235 (ACMVP2_14235) - 3293237..3293653 (-) 417 WP_317489545.1 hypothetical protein -
  ACMVP2_RS14240 (ACMVP2_14240) - 3293781..3294809 (+) 1029 WP_339784990.1 aminopeptidase -
  ACMVP2_RS14245 (ACMVP2_14245) - 3294806..3295642 (+) 837 WP_416868125.1 DUF3108 domain-containing protein -
  ACMVP2_RS14250 (ACMVP2_14250) - 3295794..3296483 (+) 690 WP_151996371.1 response regulator transcription factor -
  ACMVP2_RS14255 (ACMVP2_14255) - 3296490..3297572 (+) 1083 WP_339784994.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36988.76 Da        Isoelectric Point: 6.3082

>NTDB_id=1095441 ACMVP2_RS14230 WP_416868124.1 3292099..3293130(-) (recA) [MAG: Imperialibacter sp. isolate tig00000051]
MSDKTEKLKALALTIDKLEKTYGKGTIMKLSDERVVDVPAISTGSLGLDIALGVGGIPRGRVIEIYGPESSGKTTLSMHC
IAEAQKKGGLAAFIDAEHAFDKSYAEKLGIDTENLLISQPDNGEQALEITEHLIRSGAIDIIVIDSVAALVPKGELEGEM
GDSKMGLQARLMSQALRKLTGTINKTGCSCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRVGQIKEGADNVT
GNRTRVKVVKNKVAPPFKIVEFDIMYGKGISKVGEIIDIGVDLDIVKKSGSWFSYQETKLGQGRDSVKELLLDNPELMEE
IEKKIKEKIAGVAAPAPAVADKE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1095441 ACMVP2_RS14230 WP_416868124.1 3292099..3293130(-) (recA) [MAG: Imperialibacter sp. isolate tig00000051]
ATGAGCGATAAAACTGAAAAACTGAAGGCGCTGGCGCTGACCATCGACAAACTTGAAAAAACTTACGGCAAAGGCACCAT
CATGAAGCTGAGTGATGAGCGGGTAGTTGACGTGCCAGCCATTTCTACAGGCTCTTTGGGGCTTGATATCGCTCTTGGTG
TTGGTGGAATTCCAAGAGGCCGGGTAATTGAAATTTACGGACCGGAATCATCAGGTAAAACCACCCTTTCAATGCACTGC
ATTGCGGAGGCTCAAAAAAAGGGAGGTCTTGCTGCTTTCATTGATGCGGAACATGCCTTTGACAAATCCTATGCAGAAAA
GCTCGGCATTGACACCGAGAACCTGCTCATTTCTCAACCCGACAATGGAGAGCAGGCGCTTGAAATTACAGAACACCTGA
TCCGTTCAGGCGCTATTGACATCATCGTGATTGACTCCGTAGCTGCCCTTGTGCCAAAAGGAGAACTTGAGGGAGAAATG
GGTGATAGCAAAATGGGTTTGCAAGCCAGGTTGATGTCGCAGGCTTTGAGAAAGCTGACTGGTACTATTAATAAGACTGG
CTGTTCCTGCATATTCATTAACCAGTTGAGAGAGAAAATAGGCGTGATGTTCGGAAATCCTGAAACGACCACTGGTGGTA
ATGCGCTGAAGTTTTATGCTTCGGTTAGGCTTGACATTCGCCGTGTGGGTCAAATCAAAGAGGGCGCTGACAACGTGACT
GGCAACCGCACCCGGGTGAAAGTGGTAAAGAACAAAGTAGCGCCTCCATTCAAAATCGTGGAGTTCGACATCATGTACGG
TAAGGGTATCTCCAAAGTGGGCGAGATCATTGATATTGGGGTTGATCTGGACATTGTGAAAAAGTCAGGCTCATGGTTCT
CGTACCAGGAAACCAAGCTGGGTCAGGGAAGGGATTCAGTAAAGGAATTGCTGCTCGACAACCCGGAACTGATGGAAGAA
ATAGAAAAGAAAATCAAAGAAAAAATTGCGGGCGTTGCTGCACCGGCCCCTGCAGTGGCAGATAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.072

97.085

0.7
  recA Ralstonia pseudosolanacearum GMI1000

68.269

90.962

0.621
  recA Neisseria gonorrhoeae strain FA1090

64.832

95.335

0.618
  recA Neisseria gonorrhoeae MS11

64.832

95.335

0.618
  recA Neisseria gonorrhoeae MS11

64.832

95.335

0.618
  recA Helicobacter pylori strain NCTC11637

63.939

96.21

0.615
  recA Helicobacter pylori 26695

63.636

96.21

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

95.335

0.609
  recA Acinetobacter baylyi ADP1

61.905

97.959

0.606
  recA Acinetobacter baumannii D1279779

64.396

94.169

0.606
  recA Pseudomonas stutzeri DSM 10701

63.158

94.169

0.595
  recA Vibrio cholerae strain A1552

62.848

94.169

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

94.169

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

94.461

0.592
  recA Glaesserella parasuis strain SC1401

61.846

94.752

0.586
  recA Streptococcus pneumoniae D39

59.574

95.918

0.571
  recA Streptococcus pneumoniae TIGR4

59.574

95.918

0.571
  recA Streptococcus pneumoniae Rx1

59.574

95.918

0.571
  recA Streptococcus pneumoniae R6

59.574

95.918

0.571
  recA Streptococcus mitis NCTC 12261

59.692

94.752

0.566
  recA Streptococcus mitis SK321

59.692

94.752

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

59.752

94.169

0.563
  recA Streptococcus pyogenes NZ131

59.021

95.335

0.563
  recA Lactococcus lactis subsp. cremoris KW2

58.769

94.752

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.927

95.627

0.554
  recA Streptococcus mutans UA159

57.716

94.461

0.545

Multiple sequence alignment