Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMUJI_RS03730 Genome accession   NZ_CP180349
Coordinates   782805..783860 (-) Length   351 a.a.
NCBI ID   WP_034954387.1    Uniprot ID   A0AA48H0H2
Organism   MAG: Erythrobacter sp. isolate tig00000075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 777805..788860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMUJI_RS03720 (ACMUJI_03720) - 778093..779844 (+) 1752 WP_416832017.1 cation:proton antiporter -
  ACMUJI_RS03725 (ACMUJI_03725) alaS 779879..782545 (-) 2667 WP_416832018.1 alanine--tRNA ligase -
  ACMUJI_RS03730 (ACMUJI_03730) recA 782805..783860 (-) 1056 WP_034954387.1 recombinase RecA Machinery gene
  ACMUJI_RS03735 (ACMUJI_03735) - 784018..786105 (-) 2088 WP_416833113.1 response regulator -
  ACMUJI_RS03740 (ACMUJI_03740) - 786235..786768 (-) 534 WP_034954866.1 DUF2062 domain-containing protein -
  ACMUJI_RS03745 (ACMUJI_03745) smpB 786994..787476 (-) 483 WP_416832019.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37807.37 Da        Isoelectric Point: 5.2010

>NTDB_id=1095406 ACMUJI_RS03730 WP_034954387.1 782805..783860(-) (recA) [MAG: Erythrobacter sp. isolate tig00000075]
MATQLKLVEKEKDVDRQKALDAALAQIDRAFGKGSAMKLGQKEAMQVEAISTGSLGLDIALGVGGLPKGRVIEVYGPESS
GKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEITDTLVRSNAVDVLVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDEIIGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWYSYDSIRIGQGRENAKVYLK
ENPEICDKLEAAIRGKTDEVAEEMMTGPDAD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1095406 ACMUJI_RS03730 WP_034954387.1 782805..783860(-) (recA) [MAG: Erythrobacter sp. isolate tig00000075]
ATGGCTACGCAACTTAAGCTGGTAGAAAAGGAAAAAGACGTGGACCGTCAAAAGGCGCTCGACGCTGCGCTTGCACAGAT
TGATCGGGCTTTCGGCAAGGGTTCGGCGATGAAGCTGGGCCAGAAGGAAGCGATGCAGGTCGAAGCGATTTCGACCGGGT
CGCTGGGCCTCGATATCGCGCTCGGTGTGGGCGGCCTGCCCAAAGGCCGCGTGATCGAGGTATATGGCCCGGAAAGCTCG
GGCAAGACGACGCTGGCGCTGCATGTCATTGCCGAAGCTCAGAAGGCGGGCGGCACTGCCGCTTTCGTCGATGCCGAACA
CGCTCTGGATCCCGTCTATGCCAAGAAGCTGGGCGTGGACATTGACGAACTGATCGTCTCGCAGCCCGATACGGGTGAGC
AGGCGCTCGAAATTACCGACACGCTGGTCCGCTCGAATGCGGTGGACGTGTTGGTGGTCGATTCGGTCGCGGCGCTTGTT
CCCCGCGCCGAAATCGAGGGCGAGATGGGCGATTCCCATGTCGGCCTCCAGGCGCGGCTCATGTCCCAGTCGCTGCGCAA
GCTGACCGGATCGATCAACCGTTCGAAGTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAAATCGGCGTGATGTACG
GCAACCCGGAAACCACCACTGGTGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGTCTCGACATCCGGCGCACGGGCCAG
ATCAAGGATCGCGACGAAATCATCGGCAACACCACCCGTGTCAAAGTGGTGAAGAACAAGGTGGCCCCGCCGTTCAAGCA
GGTCGAATTCGACATCATGTACGGCGAAGGCATTTCGAAGATCGGCGAAATCCTCGATCTCGGGGTGAAGGCCGGTGTGG
TCGAGAAGTCGGGCAGCTGGTATTCCTACGACAGCATCCGGATCGGCCAGGGCCGCGAAAACGCCAAGGTCTACCTCAAG
GAAAACCCTGAAATTTGCGACAAGTTGGAAGCCGCCATTCGCGGTAAAACCGACGAGGTCGCCGAGGAGATGATGACCGG
TCCGGACGCGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

69.88

94.587

0.661
  recA Vibrio cholerae strain A1552

68.546

96.011

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.546

96.011

0.658
  recA Pseudomonas stutzeri DSM 10701

70.988

92.308

0.655
  recA Neisseria gonorrhoeae MS11

69.782

91.453

0.638
  recA Neisseria gonorrhoeae MS11

69.782

91.453

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.782

91.453

0.638
  recA Acinetobacter baylyi ADP1

68.634

91.738

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

69.062

91.168

0.63
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.073

93.447

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.412

96.866

0.624
  recA Acinetobacter baumannii D1279779

67.702

91.738

0.621
  recA Ralstonia pseudosolanacearum GMI1000

70.13

87.749

0.615
  recA Helicobacter pylori strain NCTC11637

63.314

96.296

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

63.314

96.296

0.61
  recA Helicobacter pylori 26695

63.018

96.296

0.607
  recA Streptococcus pneumoniae D39

62.315

96.011

0.598
  recA Streptococcus pneumoniae Rx1

62.315

96.011

0.598
  recA Streptococcus pneumoniae R6

62.315

96.011

0.598
  recA Streptococcus pneumoniae TIGR4

62.315

96.011

0.598
  recA Streptococcus pyogenes NZ131

60.933

97.721

0.595
  recA Streptococcus mitis NCTC 12261

62.09

95.442

0.593
  recA Streptococcus mitis SK321

61.493

95.442

0.587
  recA Streptococcus mutans UA159

60.411

97.151

0.587
  recA Lactococcus lactis subsp. cremoris KW2

59.064

97.436

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

92.593

0.573

Multiple sequence alignment