Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMVO5_RS04260 Genome accession   NZ_CP180346
Coordinates   905480..906556 (-) Length   358 a.a.
NCBI ID   WP_416908831.1    Uniprot ID   -
Organism   MAG: Polymorphobacter sp. isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 900480..911556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO5_RS04250 (ACMVO5_04250) - 903186..904022 (-) 837 WP_416908829.1 class I SAM-dependent methyltransferase -
  ACMVO5_RS04255 (ACMVO5_04255) - 904040..905434 (-) 1395 WP_416908830.1 dihydrolipoyl dehydrogenase family protein -
  ACMVO5_RS04260 (ACMVO5_04260) recA 905480..906556 (-) 1077 WP_416908831.1 recombinase RecA Machinery gene
  ACMVO5_RS04265 (ACMVO5_04265) - 906646..908256 (-) 1611 WP_416908832.1 ATP-binding protein -
  ACMVO5_RS04270 (ACMVO5_04270) - 908261..908923 (-) 663 WP_416908833.1 sulfite oxidase-like oxidoreductase -
  ACMVO5_RS04275 (ACMVO5_04275) smpB 908929..909411 (-) 483 WP_416908834.1 SsrA-binding protein SmpB -
  ACMVO5_RS04280 (ACMVO5_04280) dapA 909411..910301 (-) 891 WP_416908835.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38097.65 Da        Isoelectric Point: 5.1793

>NTDB_id=1095396 ACMVO5_RS04260 WP_416908831.1 905480..906556(-) (recA) [MAG: Polymorphobacter sp. isolate]
MAATLKVLDGGMSGSDKAKALDAALAQIDRAFGKGSVMKLGQREAMEVEAISTGSLGLDIALGIGGLPRGRVIEIYGPES
SGKTTLALHAIAEAQKGGGIAAFVDAEHALDPGYAKKLGVNIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAAL
VPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTG
QIKDRDEVVGNTTKVKVVKNKVAPPFKQVEFDIMYGEGISKLGEILDLGVKGGVIEKSGAWFSYDSIRIGQGRENAKKYL
RDNPDMADKIEKVVRSNAAGIAEAMMSGPDAEDDTDDM

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1095396 ACMVO5_RS04260 WP_416908831.1 905480..906556(-) (recA) [MAG: Polymorphobacter sp. isolate]
ATGGCAGCAACACTCAAGGTATTGGACGGGGGCATGAGCGGATCAGACAAGGCCAAGGCGCTGGATGCAGCGCTGGCACA
GATCGACCGGGCGTTTGGCAAGGGCTCGGTGATGAAGCTCGGCCAGCGCGAGGCGATGGAAGTCGAGGCCATTTCCACCG
GCTCGCTCGGCCTTGATATCGCTCTTGGCATTGGCGGCCTGCCGCGCGGCCGGGTGATCGAGATTTATGGTCCCGAGAGT
TCGGGCAAGACCACACTGGCGCTCCATGCCATCGCCGAGGCGCAGAAGGGCGGCGGCATTGCGGCCTTTGTCGACGCCGA
ACATGCGCTCGATCCCGGCTATGCCAAGAAGCTGGGCGTCAACATCGACGAGCTGATCGTCTCGCAGCCCGACACCGGCG
AGCAGGCGCTGGAAATCGTTGATACGCTGGTGCGGTCCAATGCCATTGATGTGCTGGTCGTCGATTCGGTGGCGGCGCTG
GTGCCGCGCGCGGAAATCGAGGGCGAAATGGGCGACAGCCATGTCGGCTTGCAGGCGCGGCTGATGAGCCAGTCGCTGCG
CAAGCTCACCGGCTCGATCAGCCGTTCGCGCTGCATGGTCATCTTCATCAACCAGCTGCGCATGAAGATTGGCGTCATGT
ACGGCAATCCGGAGACGACGACGGGCGGCAATGCGCTCAAATTCTACGCGTCCGTCCGCCTCGACATCCGGCGCACGGGC
CAGATCAAGGACCGTGACGAGGTCGTGGGCAACACCACCAAGGTCAAGGTGGTCAAGAACAAGGTCGCTCCGCCGTTCAA
GCAGGTCGAGTTCGATATCATGTACGGCGAAGGCATTTCCAAGCTTGGCGAGATTCTCGATCTGGGCGTCAAGGGCGGCG
TCATCGAGAAGTCCGGCGCCTGGTTCAGCTATGATTCGATCCGGATCGGCCAGGGCCGTGAGAATGCGAAGAAGTATTTG
CGCGACAACCCCGATATGGCTGACAAGATCGAGAAGGTCGTGCGCAGCAACGCGGCCGGGATTGCCGAGGCGATGATGTC
CGGCCCTGACGCCGAGGACGACACCGACGACATGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

67.544

95.531

0.645
  recA Pseudomonas stutzeri DSM 10701

67.742

95.251

0.645
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.055

95.81

0.642
  recA Vibrio cholerae strain A1552

67.055

95.81

0.642
  recA Neisseria gonorrhoeae MS11

66.374

95.531

0.634
  recA Neisseria gonorrhoeae strain FA1090

66.374

95.531

0.634
  recA Neisseria gonorrhoeae MS11

66.374

95.531

0.634
  recA Acinetobacter baylyi ADP1

64.723

95.81

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.294

94.972

0.62
  recA Acinetobacter baumannii D1279779

68.75

89.385

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.178

91.061

0.612
  recA Streptococcus pneumoniae R6

62.644

97.207

0.609
  recA Streptococcus pneumoniae TIGR4

62.644

97.207

0.609
  recA Streptococcus pneumoniae Rx1

62.644

97.207

0.609
  recA Streptococcus pneumoniae D39

62.644

97.207

0.609
  recA Ralstonia pseudosolanacearum GMI1000

70

86.592

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

66.563

90.223

0.601
  recA Streptococcus mitis NCTC 12261

65.031

91.061

0.592
  recA Helicobacter pylori strain NCTC11637

63.095

93.855

0.592
  recA Helicobacter pylori 26695

62.798

93.855

0.589
  recA Streptococcus mitis SK321

64.724

91.061

0.589
  recA Streptococcus pyogenes NZ131

64.417

91.061

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

62.651

92.737

0.581
  recA Streptococcus mutans UA159

63.19

91.061

0.575
  recA Lactococcus lactis subsp. cremoris KW2

61.468

91.341

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.342

88.268

0.55

Multiple sequence alignment