Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLBLI_RS04885 Genome accession   NZ_CP180210
Coordinates   1133393..1134433 (+) Length   346 a.a.
NCBI ID   WP_414830024.1    Uniprot ID   -
Organism   Alteromonas sp. H39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1128393..1139433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBLI_RS04875 (ACLBLI_04875) mutS 1130056..1132611 (-) 2556 WP_414830904.1 DNA mismatch repair protein MutS -
  ACLBLI_RS04880 (ACLBLI_04880) - 1132745..1133266 (+) 522 WP_414830023.1 CinA family protein -
  ACLBLI_RS04885 (ACLBLI_04885) recA 1133393..1134433 (+) 1041 WP_414830024.1 recombinase RecA Machinery gene
  ACLBLI_RS04890 (ACLBLI_04890) - 1134606..1135283 (-) 678 WP_414830025.1 hypothetical protein -
  ACLBLI_RS04895 (ACLBLI_04895) - 1135468..1136274 (+) 807 WP_414830026.1 ATP-binding cassette domain-containing protein -
  ACLBLI_RS04900 (ACLBLI_04900) - 1136258..1137454 (+) 1197 WP_414830027.1 ABC transporter permease subunit -
  ACLBLI_RS04905 (ACLBLI_04905) - 1137498..1137809 (-) 312 WP_414830028.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37340.79 Da        Isoelectric Point: 5.1978

>NTDB_id=1094558 ACLBLI_RS04885 WP_414830024.1 1133393..1134433(+) (recA) [Alteromonas sp. H39]
MDDNRSKALSAAVGQIEKQFGKGAIMRLGDNQAMDIEAISTGSLSIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPLYAGKLGVNIDDLLVSQPDTGEQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTANIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGKANVINYLKEHKDIANEIET
KIREELLLNKSVKAEEAEGESEDTLS

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1094558 ACLBLI_RS04885 WP_414830024.1 1133393..1134433(+) (recA) [Alteromonas sp. H39]
GTGGACGACAACAGATCAAAAGCACTGTCTGCAGCAGTCGGGCAAATTGAAAAGCAATTCGGTAAGGGCGCTATCATGCG
TCTTGGCGACAACCAGGCAATGGATATCGAAGCCATCTCTACCGGTTCACTGAGTATCGACATCGCGCTGGGTATAGGCG
GATTGCCATGCGGGCGTGTAGTAGAAATCTATGGACCTGAATCGTCAGGTAAAACCACGCTGACGTTGCAGGTTATTGCT
GAAGCGCAGAAAAAAGGTAAGACATGCGCATTCGTCGATGCCGAGCATGCGCTGGATCCGTTGTATGCAGGTAAGCTTGG
CGTAAACATTGACGATCTGCTGGTATCTCAGCCAGACACGGGTGAACAGGCGCTGGAAATCTGTGACATGCTGGTTCGTT
CAGGTGCTGTTGATGTCGTCATCGTTGACTCGGTAGCCGCCTTGACACCAAAAGCGGAAATCGAAGGGGATATGGGTGAC
TCGCACGTCGGCCTTCAGGCACGTCTGATGTCACAGGCGCTGCGTAAACTGACTGCGAATATTAAGCGCTCCAATACCCT
GTGTATTTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACAACCGGTGGTAATGCAC
TGAAGTTCTACTCTTCTGTTCGTCTGGATATTCGTCGCATTGGTGCGGTGAAAGAAGGTGATGAAGTGGTGGGTAACGAA
ACCCGCGTGAAGGTAGTGAAGAACAAAGTGGCACCGCCGTTTAAACAAGCAGAATTTATGATCCGCTACGGCGAAGGGAT
AAGCAAAGAAGCTGAACTTATCGACCTGGGCGTGAAGCAAAAGCTGGTAGATAAAGCCGGTGCCTGGTACAGCTACAAAG
GCGACCGCATTGGTCAGGGTAAAGCTAACGTGATCAATTATCTTAAAGAGCATAAAGATATTGCCAACGAAATTGAGACT
AAAATCCGCGAAGAGTTGCTGTTAAACAAGTCTGTGAAAGCAGAGGAAGCGGAAGGTGAATCGGAAGATACATTGTCGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.341

95.665

0.74
  recA Vibrio cholerae O1 biovar El Tor strain E7946

77.676

94.509

0.734
  recA Vibrio cholerae strain A1552

77.676

94.509

0.734
  recA Acinetobacter baumannii D1279779

72.754

99.711

0.725
  recA Acinetobacter baylyi ADP1

72.886

99.133

0.723
  recA Glaesserella parasuis strain SC1401

69.501

98.555

0.685
  recA Neisseria gonorrhoeae MS11

72.84

93.642

0.682
  recA Neisseria gonorrhoeae MS11

72.84

93.642

0.682
  recA Neisseria gonorrhoeae strain FA1090

72.84

93.642

0.682
  recA Ralstonia pseudosolanacearum GMI1000

72.99

89.884

0.656
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.743

98.844

0.63
  recA Helicobacter pylori strain NCTC11637

64.565

96.243

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

65.549

94.798

0.621
  recA Helicobacter pylori 26695

63.964

96.243

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

95.665

0.59
  recA Streptococcus mitis SK321

58.382

100

0.584
  recA Streptococcus pneumoniae Rx1

61.585

94.798

0.584
  recA Streptococcus pneumoniae D39

61.585

94.798

0.584
  recA Streptococcus pneumoniae R6

61.585

94.798

0.584
  recA Streptococcus pneumoniae TIGR4

61.585

94.798

0.584
  recA Streptococcus mutans UA159

58.43

99.422

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

92.775

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.382

92.197

0.575
  recA Streptococcus mitis NCTC 12261

61.3

93.353

0.572
  recA Streptococcus pyogenes NZ131

60.615

93.931

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.204

93.353

0.543

Multiple sequence alignment