Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACINK0_RS04310 Genome accession   NZ_CP179945
Coordinates   821979..823055 (-) Length   358 a.a.
NCBI ID   WP_339094580.1    Uniprot ID   -
Organism   Deinococcus sp. VB343     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 816979..828055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK0_RS04285 (ACINK0_04285) - 817490..818110 (+) 621 WP_339094591.1 TetR/AcrR family transcriptional regulator -
  ACINK0_RS04290 (ACINK0_04290) surE 818136..818933 (-) 798 WP_339094589.1 5'/3'-nucleotidase SurE -
  ACINK0_RS04295 (ACINK0_04295) - 819029..819946 (-) 918 WP_414657407.1 magnesium transporter CorA family protein -
  ACINK0_RS04300 (ACINK0_04300) crcB 820165..820545 (+) 381 WP_339094584.1 fluoride efflux transporter CrcB -
  ACINK0_RS04305 (ACINK0_04305) xseA 820542..821795 (+) 1254 WP_339094582.1 exodeoxyribonuclease VII large subunit -
  ACINK0_RS04310 (ACINK0_04310) recA 821979..823055 (-) 1077 WP_339094580.1 recombinase RecA Machinery gene
  ACINK0_RS04315 (ACINK0_04315) thpR 823052..823744 (-) 693 WP_414657408.1 RNA 2',3'-cyclic phosphodiesterase -
  ACINK0_RS04320 (ACINK0_04320) - 823741..824934 (-) 1194 WP_414657409.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ACINK0_RS04325 (ACINK0_04325) - 825029..825994 (+) 966 WP_339094574.1 potassium channel protein -
  ACINK0_RS04330 (ACINK0_04330) - 826023..826661 (+) 639 WP_414657410.1 DsbA family oxidoreductase -
  ACINK0_RS04335 (ACINK0_04335) - 826833..827897 (-) 1065 WP_339094568.1 agmatine/peptidylarginine deiminase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 37708.32 Da        Isoelectric Point: 5.3528

>NTDB_id=1094053 ACINK0_RS04310 WP_339094580.1 821979..823055(-) (recA) [Deinococcus sp. VB343]
MSKDNPKEITAAPADAKERLKAIETAMSQIEKQFGKGSIMKLGAESKLDVQVISTGSLSLDLALGVGGIPRGRVTEIYGP
ESGGKTTLALAIVAQAQKAGGTAAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVIDSVA
ALTPRAEIEGDMGDALPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRK
IGQPTKSGNDAIANTVKIKTVKNKVAAPFKEVELALVYGKGFDQLTDLVGLAADMDIIKKSGSFYSYGDERIGQGKEKAI
AYIAERPEMEQEIRDKVMAAIRGGSAPEAAPAPAPAEA

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1094053 ACINK0_RS04310 WP_339094580.1 821979..823055(-) (recA) [Deinococcus sp. VB343]
ATGAGCAAGGACAATCCCAAGGAAATCACCGCCGCCCCCGCCGACGCCAAGGAGCGCCTCAAGGCCATCGAAACCGCCAT
GAGCCAGATTGAAAAGCAGTTCGGCAAAGGCTCCATCATGAAACTCGGCGCCGAGAGCAAGCTCGACGTGCAGGTCATCA
GCACCGGCAGCCTCAGCCTCGACCTCGCGCTGGGCGTCGGCGGCATTCCGCGTGGGCGCGTGACCGAAATCTACGGCCCC
GAGTCGGGCGGCAAGACCACGCTGGCCCTGGCGATTGTGGCGCAGGCGCAGAAAGCGGGCGGCACGGCGGCCTTCATCGA
CGCCGAACACGCCCTCGACCCCGTCTATGCCCGTGCGCTGGGCGTCAACACCGACGAACTGCTGGTGTCGCAGCCCGACA
ACGGCGAGCAGGCGCTGGAAATCATGGAACTGCTGGTGCGCTCGGGCGCGATTGACGTGGTCGTCATCGACTCGGTGGCG
GCCCTGACCCCCCGCGCCGAAATCGAGGGGGACATGGGCGACGCGCTACCCGGCCTGCAAGCCCGCCTGATGTCGCAGGC
CCTGCGCAAACTGACCGCGATTCTGTCCAAGACGGGCACCGCCGCCATTTTCATCAACCAGGTGCGCGAAAAAATCGGTG
TGATGTACGGCAACCCCGAAACCACGACGGGCGGACGGGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGACGTGCGTAAA
ATCGGTCAGCCCACCAAGTCGGGCAACGACGCGATTGCCAACACCGTCAAAATCAAGACGGTCAAGAACAAGGTCGCCGC
GCCCTTCAAGGAAGTCGAACTGGCGCTGGTCTACGGCAAAGGCTTCGACCAGCTCACCGACCTCGTGGGCCTCGCCGCCG
ACATGGACATCATCAAGAAGTCGGGCAGCTTCTACTCCTACGGCGACGAGCGCATCGGGCAGGGCAAGGAAAAGGCCATC
GCCTACATCGCCGAGCGCCCCGAGATGGAGCAGGAAATCCGCGACAAGGTCATGGCGGCCATTCGTGGCGGGAGCGCCCC
CGAAGCGGCTCCCGCGCCCGCCCCGGCTGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

94.203

96.369

0.908
  recA Streptococcus pneumoniae Rx1

64.087

90.223

0.578
  recA Streptococcus pneumoniae TIGR4

64.087

90.223

0.578
  recA Streptococcus pneumoniae R6

64.087

90.223

0.578
  recA Streptococcus pneumoniae D39

64.087

90.223

0.578
  recA Glaesserella parasuis strain SC1401

63.692

90.782

0.578
  recA Streptococcus mitis SK321

63.777

90.223

0.575
  recA Streptococcus mitis NCTC 12261

63.777

90.223

0.575
  recA Streptococcus pyogenes NZ131

61.377

93.296

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

61.631

92.458

0.57
  recA Streptococcus mutans UA159

60.778

93.296

0.567
  recA Acinetobacter baumannii D1279779

61.491

89.944

0.553
  recA Acinetobacter baylyi ADP1

62.62

87.43

0.547
  recA Bacillus subtilis subsp. subtilis str. 168

60.938

89.385

0.545
  recA Lactococcus lactis subsp. cremoris KW2

59.816

91.061

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.514

88.547

0.545
  recA Vibrio cholerae strain A1552

61.514

88.547

0.545
  recA Neisseria gonorrhoeae MS11

59.385

90.782

0.539
  recA Neisseria gonorrhoeae strain FA1090

59.385

90.782

0.539
  recA Neisseria gonorrhoeae MS11

59.385

90.782

0.539
  recA Ralstonia pseudosolanacearum GMI1000

62.662

86.034

0.539
  recA Helicobacter pylori strain NCTC11637

56.509

94.413

0.534
  recA Helicobacter pylori 26695

56.509

94.413

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.757

93.017

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.554

87.709

0.522
  recA Pseudomonas stutzeri DSM 10701

57.009

89.665

0.511

Multiple sequence alignment