Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ACMG4N_RS07955 Genome accession   NZ_CP179932
Coordinates   1702558..1703595 (+) Length   345 a.a.
NCBI ID   WP_297766259.1    Uniprot ID   -
Organism   Alcanivorax sp. IL2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1697558..1708595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMG4N_RS07930 (ACMG4N_07930) - 1697667..1698140 (+) 474 WP_297766245.1 NYN domain-containing protein -
  ACMG4N_RS07935 (ACMG4N_07935) - 1698222..1699496 (-) 1275 WP_297766248.1 bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase -
  ACMG4N_RS07940 (ACMG4N_07940) rnk 1699569..1699949 (-) 381 WP_297766250.1 nucleoside diphosphate kinase regulator -
  ACMG4N_RS07945 (ACMG4N_07945) - 1700343..1701695 (+) 1353 WP_297766253.1 WS/DGAT/MGAT family O-acyltransferase -
  ACMG4N_RS07950 (ACMG4N_07950) - 1701768..1702286 (+) 519 WP_297766256.1 CinA family protein -
  ACMG4N_RS07955 (ACMG4N_07955) recA 1702558..1703595 (+) 1038 WP_297766259.1 recombinase RecA Machinery gene
  ACMG4N_RS07960 (ACMG4N_07960) - 1703588..1704055 (+) 468 WP_414433258.1 regulatory protein RecX -
  ACMG4N_RS07965 (ACMG4N_07965) - 1704284..1705051 (+) 768 WP_035246462.1 sulfite exporter TauE/SafE family protein -
  ACMG4N_RS07970 (ACMG4N_07970) alaS 1705227..1707827 (+) 2601 WP_414433259.1 alanine--tRNA ligase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37051.22 Da        Isoelectric Point: 5.0548

>NTDB_id=1093957 ACMG4N_RS07955 WP_297766259.1 1702558..1703595(+) (recA) [Alcanivorax sp. IL2]
MSDKGKALSAALSQIERQFGKGSVMRMGDRKRERMPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQ
AQKKGATCAFVDAEHALDPDYAEKLGVNVDDLIVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALVPKAEIEGEMGDT
HVGLQARLMSQALRKITGNVKNANTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKQGDEVTGNET
RVKVVKNKVSPPFRQAEFQILYGQGINQLGEVLDLGVQQGLVDKSGAWYAYKGDKIGQGKQNACEFLRENPAIAEEIEQE
IRARLLPDPTEAPAAKEEEAEAGNE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1093957 ACMG4N_RS07955 WP_297766259.1 1702558..1703595(+) (recA) [Alcanivorax sp. IL2]
ATGAGCGATAAAGGTAAGGCGCTGTCCGCGGCGCTGTCACAGATTGAGCGTCAATTCGGCAAGGGTTCTGTCATGCGCAT
GGGCGATCGCAAGCGCGAGCGCATGCCGTCCATTTCCACCGGCTCTCTGGGGCTGGATATTGCTCTGGGCATCGGCGGGC
TCCCGAAAGGCCGTATCGTGGAAATCTATGGCCCGGAATCCTCCGGTAAAACCACCCTCACCCTCAGCGTGATTGCCCAG
GCGCAGAAAAAAGGCGCCACCTGCGCCTTTGTGGATGCGGAACACGCCCTGGATCCTGACTACGCCGAGAAGCTGGGCGT
CAACGTGGATGACTTGATCGTGTCTCAGCCGGATACCGGTGAGCAGGCCCTGGAAATTACCGACATGCTGGTGCGCTCCG
GCGCTGTGGACGTGGTGATCGTCGATTCCGTGGCGGCGCTGGTGCCCAAGGCGGAAATTGAAGGCGAAATGGGCGACACC
CATGTGGGCCTGCAGGCTCGTCTGATGAGCCAGGCGCTGCGCAAGATCACCGGCAATGTGAAAAATGCCAATACCCTGGT
GGTGTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGGGGTAACGCCCTCA
AGTTCTACTCCTCCGTGCGCCTGGATATCCGTCGTATCGGTGCGGTGAAGCAGGGTGACGAAGTCACCGGTAACGAAACC
CGCGTGAAGGTGGTGAAGAACAAGGTATCGCCGCCGTTCCGTCAGGCCGAATTCCAGATTCTGTACGGCCAGGGCATCAA
TCAGCTGGGTGAAGTGCTGGACCTGGGTGTGCAGCAGGGTCTGGTGGACAAATCCGGTGCCTGGTATGCCTACAAGGGCG
ACAAGATTGGCCAGGGCAAGCAGAACGCCTGCGAATTCCTGCGTGAGAACCCGGCCATCGCCGAGGAAATCGAGCAGGAA
ATCCGTGCCCGCTTGCTGCCTGATCCCACTGAGGCACCCGCTGCCAAGGAAGAGGAAGCCGAAGCCGGCAATGAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.871

99.13

0.812

  recA Acinetobacter baylyi ADP1

72.566

98.261

0.713

  recA Acinetobacter baumannii D1279779

71.976

98.261

0.707

  recA Glaesserella parasuis strain SC1401

72.171

94.783

0.684

  recA Neisseria gonorrhoeae MS11

72.671

93.333

0.678

  recA Neisseria gonorrhoeae MS11

72.671

93.333

0.678

  recA Neisseria gonorrhoeae strain FA1090

72.671

93.333

0.678

  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.914

93.913

0.675

  recA Vibrio cholerae strain A1552

71.914

93.913

0.675

  recA Ralstonia pseudosolanacearum GMI1000

70.336

94.783

0.667

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.123

93.913

0.612

  recA Helicobacter pylori strain NCTC11637

62.202

97.391

0.606

  recA Helicobacter pylori 26695

62.202

97.391

0.606

  recA Bacillus subtilis subsp. subtilis str. 168

63.665

93.333

0.594

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

95.362

0.583

  recA Streptococcus mutans UA159

57.061

100

0.574

  recA Streptococcus mitis NCTC 12261

57.267

99.71

0.571

  recA Streptococcus mitis SK321

57.143

99.42

0.568

  recA Latilactobacillus sakei subsp. sakei 23K

60.568

91.884

0.557

  recA Streptococcus pneumoniae Rx1

57.927

95.072

0.551

  recA Streptococcus pneumoniae D39

57.927

95.072

0.551

  recA Streptococcus pneumoniae R6

57.927

95.072

0.551

  recA Streptococcus pneumoniae TIGR4

57.927

95.072

0.551

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.154

94.203

0.548

  recA Streptococcus pyogenes NZ131

57.716

93.913

0.542

  recA Lactococcus lactis subsp. cremoris KW2

56.748

94.493

0.536


Multiple sequence alignment