Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMG4M_RS12515 Genome accession   NZ_CP179931
Coordinates   2691368..2692405 (-) Length   345 a.a.
NCBI ID   WP_035246459.1    Uniprot ID   A0A7G2S232
Organism   Alcanivorax sp. IL3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2686368..2697405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMG4M_RS12500 (ACMG4M_12500) alaS 2687149..2689749 (-) 2601 WP_272961709.1 alanine--tRNA ligase -
  ACMG4M_RS12505 (ACMG4M_12505) - 2689926..2690693 (-) 768 WP_035246462.1 sulfite exporter TauE/SafE family protein -
  ACMG4M_RS12510 (ACMG4M_12510) - 2690908..2691375 (-) 468 WP_035246461.1 regulatory protein RecX -
  ACMG4M_RS12515 (ACMG4M_12515) recA 2691368..2692405 (-) 1038 WP_035246459.1 recombinase RecA Machinery gene
  ACMG4M_RS12520 (ACMG4M_12520) - 2692560..2693048 (-) 489 WP_035246457.1 CinA family protein -
  ACMG4M_RS12525 (ACMG4M_12525) - 2693178..2693390 (-) 213 WP_084573426.1 wax ester/triacylglycerol synthase domain-containing protein -
  ACMG4M_RS12530 (ACMG4M_12530) - 2693638..2694525 (+) 888 WP_035246455.1 LysR substrate-binding domain-containing protein -
  ACMG4M_RS12535 (ACMG4M_12535) - 2694632..2695126 (+) 495 WP_035246454.1 hypothetical protein -
  ACMG4M_RS12540 (ACMG4M_12540) - 2695126..2696691 (+) 1566 WP_272961711.1 GMC oxidoreductase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37111.27 Da        Isoelectric Point: 5.0548

>NTDB_id=1093938 ACMG4M_RS12515 WP_035246459.1 2691368..2692405(-) (recA) [Alcanivorax sp. IL3]
MSDKSKALSAALSQIERQFGKGSVMRMGDRKRERMPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQ
AQKKGATCAFVDAEHALDPDYAEKLGVNVDDLIVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALVPKAEIEGEMGDT
HVGLQARLMSQALRKITGNVKNANTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKQGDEVTGNET
RVKVVKNKVSPPFRQAEFQILYGQGINQLGEVLDLGVQQGLVDKSGAWYAYKGDKIGQGKQNACEYLRENPAVAEEIEQE
IRARLLPDPTEAPAVKEEEAEAGNE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1093938 ACMG4M_RS12515 WP_035246459.1 2691368..2692405(-) (recA) [Alcanivorax sp. IL3]
ATGAGCGATAAATCCAAGGCGCTGTCCGCCGCACTATCCCAGATCGAACGTCAGTTTGGTAAAGGTTCCGTGATGCGCAT
GGGCGATCGCAAGCGCGAGCGCATGCCGTCCATTTCCACCGGCTCCCTGGGGCTGGATATTGCTCTTGGTATTGGTGGTC
TGCCGAAAGGGCGTATCGTGGAAATCTATGGCCCGGAATCCTCTGGTAAGACCACCCTGACCCTGAGCGTGATCGCCCAG
GCGCAGAAGAAAGGCGCTACCTGTGCCTTTGTGGATGCAGAGCACGCCCTGGACCCGGACTATGCCGAGAAGCTGGGCGT
GAACGTGGATGACCTGATCGTGTCCCAGCCGGACACCGGTGAGCAGGCACTGGAAATTACTGACATGCTGGTGCGTTCCG
GCGCGGTGGATGTGGTGATTGTTGATTCCGTGGCGGCACTGGTGCCGAAGGCCGAAATTGAAGGCGAAATGGGTGACACC
CACGTTGGCCTGCAGGCTCGTCTGATGAGCCAGGCGCTGCGCAAGATCACCGGCAATGTGAAAAACGCCAATACCCTGGT
GGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAACCCGGAAACCACCACCGGGGGTAACGCCCTCA
AGTTCTATTCCTCCGTGCGCCTGGATATCCGTCGTATCGGCGCGGTGAAGCAGGGTGACGAAGTCACCGGTAACGAAACC
CGCGTGAAGGTGGTGAAGAACAAGGTATCGCCGCCGTTCCGTCAGGCCGAATTCCAGATTCTTTACGGCCAGGGCATCAA
TCAGCTGGGTGAAGTGCTGGACCTGGGTGTGCAGCAGGGCCTGGTGGATAAATCCGGTGCCTGGTATGCCTACAAAGGTG
ACAAGATCGGCCAGGGCAAGCAGAACGCCTGTGAGTACCTGCGTGAAAACCCGGCTGTCGCCGAGGAAATCGAACAGGAA
ATCCGCGCTCGCTTGCTGCCTGATCCCACTGAGGCGCCGGCTGTCAAGGAAGAGGAAGCCGAAGCCGGCAATGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2S232

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

82.164

99.13

0.814
  recA Acinetobacter baylyi ADP1

72.566

98.261

0.713
  recA Acinetobacter baumannii D1279779

72.271

98.261

0.71
  recA Glaesserella parasuis strain SC1401

71.865

94.783

0.681
  recA Neisseria gonorrhoeae MS11

72.671

93.333

0.678
  recA Neisseria gonorrhoeae MS11

72.671

93.333

0.678
  recA Neisseria gonorrhoeae strain FA1090

72.671

93.333

0.678
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.914

93.913

0.675
  recA Vibrio cholerae strain A1552

71.914

93.913

0.675
  recA Ralstonia pseudosolanacearum GMI1000

70.031

94.783

0.664
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

93.913

0.606
  recA Helicobacter pylori 26695

62.202

97.391

0.606
  recA Helicobacter pylori strain NCTC11637

62.202

97.391

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

93.333

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

95.362

0.583
  recA Streptococcus mitis SK321

57.726

99.42

0.574
  recA Streptococcus mitis NCTC 12261

57.267

99.71

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

93.043

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.769

94.203

0.554
  recA Streptococcus pneumoniae R6

57.927

95.072

0.551
  recA Streptococcus pneumoniae TIGR4

57.927

95.072

0.551
  recA Streptococcus pneumoniae D39

57.927

95.072

0.551
  recA Streptococcus pneumoniae Rx1

57.927

95.072

0.551
  recA Streptococcus mutans UA159

58.282

94.493

0.551
  recA Streptococcus pyogenes NZ131

57.492

94.783

0.545
  recA Lactococcus lactis subsp. cremoris KW2

57.362

94.493

0.542

Multiple sequence alignment