Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMGRF_RS05745 Genome accession   NZ_CP179923
Coordinates   1244373..1245410 (+) Length   345 a.a.
NCBI ID   WP_049412870.1    Uniprot ID   -
Organism   Stenotrophomonas sp. EMP41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1239373..1250410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGRF_RS05720 (ACMGRF_05720) hfq 1239398..1239673 (+) 276 WP_004152891.1 RNA chaperone Hfq -
  ACMGRF_RS05725 (ACMGRF_05725) hflX 1239688..1240998 (+) 1311 WP_049439898.1 ribosome rescue GTPase HflX -
  ACMGRF_RS05730 (ACMGRF_05730) - 1241118..1241612 (+) 495 WP_049412881.1 CinA family protein -
  ACMGRF_RS05735 (ACMGRF_05735) ubiB 1241647..1243329 (+) 1683 WP_111191467.1 2-polyprenylphenol 6-hydroxylase -
  ACMGRF_RS05740 (ACMGRF_05740) lexA 1243533..1244168 (+) 636 WP_005412936.1 transcriptional repressor LexA -
  ACMGRF_RS05745 (ACMGRF_05745) recA 1244373..1245410 (+) 1038 WP_049412870.1 recombinase RecA Machinery gene
  ACMGRF_RS05750 (ACMGRF_05750) recX 1245521..1246012 (+) 492 WP_049439895.1 recombination regulator RecX -
  ACMGRF_RS05755 (ACMGRF_05755) alaS 1246122..1248770 (+) 2649 WP_049439894.1 alanine--tRNA ligase -
  ACMGRF_RS05760 (ACMGRF_05760) csrA 1248918..1249121 (+) 204 WP_004152909.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37122.58 Da        Isoelectric Point: 4.7625

>NTDB_id=1093859 ACMGRF_RS05745 WP_049412870.1 1244373..1245410(+) (recA) [Stenotrophomonas sp. EMP41]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRVVEPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKMGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGDERIGQGKDNARGYLRDNPTVAAKL
EAELREKFQPAEAAREEGDDEGDDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1093859 ACMGRF_RS05745 WP_049412870.1 1244373..1245410(+) (recA) [Stenotrophomonas sp. EMP41]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCTGCTCTGGGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTGGTCGAGCCCGTCGAGGCCATCCCGACCGGTTCGCTGATGCTCGACATCGCACTGGGCATTGGCG
GTCTGCCGAAGGGCCGTGTCGTTGAGATCTACGGGCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
GAATGCCAGAAGATGGGCGGCACTGCGGCCTTCATCGATGCCGAGCACGCGCTGGACCCGATCTACGCCGCGAAGCTGGG
CGTGAACGTGGACGACCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTCCGTT
CGGGCTCGGTCGACATCCTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAAATGGGTGAC
CAGCTGCCGGGTCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGTTGACCGGCAACATCAAGCGTTCCAACACCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTCAAGTTCTATGCCTCGGTCCGGCTGGACATCCGCCGTATCGGTGCGATCAAGAAGGGCGATGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCGA
AGGCATCAGCCGCGAGGGCGAACTGATCGACATGGGCGTGGATGCCAAGCTGGTCGAGAAGGCCGGCGCCTGGTACAGCT
ACGGTGATGAGCGCATTGGCCAGGGCAAGGACAATGCCCGTGGCTACCTGCGTGACAACCCGACCGTCGCCGCCAAGCTC
GAGGCCGAGCTGCGTGAGAAATTCCAGCCGGCCGAAGCGGCCCGCGAGGAAGGCGACGACGAAGGCGACGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.435

100

0.704
  recA Pseudomonas stutzeri DSM 10701

73.476

95.072

0.699
  recA Ralstonia pseudosolanacearum GMI1000

76.677

90.725

0.696
  recA Acinetobacter baumannii D1279779

72.561

95.072

0.69
  recA Vibrio cholerae strain A1552

72.393

94.493

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.393

94.493

0.684
  recA Neisseria gonorrhoeae MS11

65.143

100

0.661
  recA Neisseria gonorrhoeae MS11

65.143

100

0.661
  recA Neisseria gonorrhoeae strain FA1090

65.143

100

0.661
  recA Glaesserella parasuis strain SC1401

65.407

99.71

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.371

96.812

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.919

99.71

0.617
  recA Latilactobacillus sakei subsp. sakei 23K

61.493

97.101

0.597
  recA Helicobacter pylori strain NCTC11637

62.048

96.232

0.597
  recA Streptococcus mitis SK321

60.058

99.42

0.597
  recA Helicobacter pylori 26695

61.446

96.232

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.203

0.591
  recA Streptococcus mitis NCTC 12261

61.28

95.072

0.583
  recA Streptococcus pneumoniae Rx1

61.28

95.072

0.583
  recA Streptococcus pneumoniae D39

61.28

95.072

0.583
  recA Streptococcus pneumoniae R6

61.28

95.072

0.583
  recA Streptococcus pneumoniae TIGR4

61.28

95.072

0.583
  recA Streptococcus pyogenes NZ131

60.606

95.652

0.58
  recA Streptococcus mutans UA159

60.606

95.652

0.58
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.203

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.485

95.652

0.559

Multiple sequence alignment