Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ACMGGG_RS17830 | Genome accession | NZ_CP179908 |
| Coordinates | 3877514..3878581 (-) | Length | 355 a.a. |
| NCBI ID | WP_063545891.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. BNK-44-b | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3871653..3906562 | 3877514..3878581 | within | 0 |
Gene organization within MGE regions
Location: 3871653..3906562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMGGG_RS17790 (ACMGGG_17790) | finR | 3871653..3872579 (+) | 927 | WP_054891021.1 | LysR family transcriptional regulator FinR | - |
| ACMGGG_RS17795 (ACMGGG_17795) | - | 3872583..3872948 (-) | 366 | WP_054891022.1 | diacylglycerol kinase | - |
| ACMGGG_RS17800 (ACMGGG_17800) | erdR | 3873021..3873671 (-) | 651 | WP_054891023.1 | response regulator transcription factor ErdR | - |
| ACMGGG_RS17805 (ACMGGG_17805) | - | 3873928..3874638 (-) | 711 | WP_065862255.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACMGGG_RS17810 (ACMGGG_17810) | - | 3874861..3875283 (+) | 423 | WP_063545888.1 | quorum-sensing-regulated virulence factor family protein | - |
| ACMGGG_RS17815 (ACMGGG_17815) | - | 3875285..3875488 (-) | 204 | WP_112899004.1 | hypothetical protein | - |
| ACMGGG_RS17820 (ACMGGG_17820) | - | 3875845..3876963 (+) | 1119 | WP_054891027.1 | LOG family protein | - |
| ACMGGG_RS17825 (ACMGGG_17825) | recX | 3877024..3877494 (-) | 471 | WP_414154149.1 | recombination regulator RecX | - |
| ACMGGG_RS17830 (ACMGGG_17830) | recA | 3877514..3878581 (-) | 1068 | WP_063545891.1 | recombinase RecA | Machinery gene |
| ACMGGG_RS17835 (ACMGGG_17835) | - | 3878686..3879168 (-) | 483 | WP_414154150.1 | CinA family protein | - |
| ACMGGG_RS17840 (ACMGGG_17840) | - | 3879228..3879728 (-) | 501 | WP_414154151.1 | lysis system i-spanin subunit Rz | - |
| ACMGGG_RS17845 (ACMGGG_17845) | - | 3879722..3880270 (-) | 549 | WP_063545893.1 | glycoside hydrolase family 19 protein | - |
| ACMGGG_RS17850 (ACMGGG_17850) | - | 3880341..3880697 (-) | 357 | WP_063545894.1 | hypothetical protein | - |
| ACMGGG_RS17855 (ACMGGG_17855) | - | 3880750..3880893 (-) | 144 | Protein_3495 | zinc finger domain-containing protein | - |
| ACMGGG_RS17860 (ACMGGG_17860) | - | 3880924..3881958 (-) | 1035 | WP_125931566.1 | phage late control D family protein | - |
| ACMGGG_RS17865 (ACMGGG_17865) | - | 3881999..3882205 (-) | 207 | WP_414154152.1 | tail protein X | - |
| ACMGGG_RS17870 (ACMGGG_17870) | - | 3882180..3883025 (-) | 846 | WP_197890589.1 | phage tail protein | - |
| ACMGGG_RS17875 (ACMGGG_17875) | - | 3883041..3885071 (-) | 2031 | WP_414154153.1 | hypothetical protein | - |
| ACMGGG_RS17880 (ACMGGG_17880) | - | 3885196..3885498 (-) | 303 | WP_063545900.1 | phage tail assembly protein | - |
| ACMGGG_RS17885 (ACMGGG_17885) | - | 3885510..3886019 (-) | 510 | WP_414154154.1 | phage major tail tube protein | - |
| ACMGGG_RS17890 (ACMGGG_17890) | - | 3886033..3887199 (-) | 1167 | WP_125931562.1 | phage tail sheath family protein | - |
| ACMGGG_RS17895 (ACMGGG_17895) | - | 3887327..3887908 (-) | 582 | WP_162714423.1 | hypothetical protein | - |
| ACMGGG_RS17900 (ACMGGG_17900) | - | 3887924..3889654 (-) | 1731 | WP_414154155.1 | phage tail protein | - |
| ACMGGG_RS17905 (ACMGGG_17905) | - | 3889647..3890255 (-) | 609 | WP_063545903.1 | phage tail protein I | - |
| ACMGGG_RS17910 (ACMGGG_17910) | - | 3890257..3891138 (-) | 882 | WP_065862268.1 | baseplate J/gp47 family protein | - |
| ACMGGG_RS17915 (ACMGGG_17915) | - | 3891135..3891461 (-) | 327 | WP_063545905.1 | GPW/gp25 family protein | - |
| ACMGGG_RS17920 (ACMGGG_17920) | - | 3891549..3892109 (-) | 561 | WP_414154156.1 | phage baseplate assembly protein V | - |
| ACMGGG_RS17925 (ACMGGG_17925) | - | 3892106..3892603 (-) | 498 | WP_414154157.1 | hypothetical protein | - |
| ACMGGG_RS17930 (ACMGGG_17930) | - | 3892615..3892938 (-) | 324 | WP_054891048.1 | phage holin family protein | - |
| ACMGGG_RS17935 (ACMGGG_17935) | - | 3893479..3894213 (-) | 735 | WP_151925098.1 | helix-turn-helix transcriptional regulator | - |
| ACMGGG_RS17940 (ACMGGG_17940) | - | 3894278..3894718 (-) | 441 | WP_414154158.1 | hypothetical protein | - |
| ACMGGG_RS17945 (ACMGGG_17945) | mutS | 3894866..3897436 (+) | 2571 | WP_054891050.1 | DNA mismatch repair protein MutS | - |
| ACMGGG_RS17950 (ACMGGG_17950) | fdxA | 3897573..3897896 (+) | 324 | WP_054891051.1 | ferredoxin FdxA | - |
| ACMGGG_RS17955 (ACMGGG_17955) | rpoS | 3898400..3899407 (-) | 1008 | WP_054891052.1 | RNA polymerase sigma factor RpoS | - |
| ACMGGG_RS17960 (ACMGGG_17960) | - | 3899517..3900377 (-) | 861 | WP_414154159.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| ACMGGG_RS17965 (ACMGGG_17965) | - | 3900566..3901204 (-) | 639 | WP_162714454.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| ACMGGG_RS17970 (ACMGGG_17970) | surE | 3901246..3901995 (-) | 750 | WP_414154160.1 | 5'/3'-nucleotidase SurE | - |
| ACMGGG_RS17975 (ACMGGG_17975) | truD | 3901983..3903041 (-) | 1059 | WP_063545912.1 | tRNA pseudouridine(13) synthase TruD | - |
| ACMGGG_RS17980 (ACMGGG_17980) | ispF | 3903038..3903511 (-) | 474 | WP_054891057.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| ACMGGG_RS17985 (ACMGGG_17985) | fghA | 3903584..3904438 (-) | 855 | WP_414154161.1 | S-formylglutathione hydrolase | - |
| ACMGGG_RS17990 (ACMGGG_17990) | - | 3904447..3905559 (-) | 1113 | WP_009686067.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| ACMGGG_RS17995 (ACMGGG_17995) | - | 3905666..3906562 (+) | 897 | WP_054891059.1 | LysR substrate-binding domain-containing protein | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37604.94 Da Isoelectric Point: 5.3157
>NTDB_id=1093775 ACMGGG_RS17830 WP_063545891.1 3877514..3878581(-) (recA) [Pseudomonas sp. BNK-44-b]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGSEIEK
QIREKLLTSGAVAAAGKAAAAEADADDMADAEAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGSEIEK
QIREKLLTSGAVAAAGKAAAAEADADDMADAEAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=1093775 ACMGGG_RS17830 WP_063545891.1 3877514..3878581(-) (recA) [Pseudomonas sp. BNK-44-b]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAGGGCGCAGTCATGCG
CATGGGCGATCACGAACGCCAGGCCATCCCGGCCATCTCCACCGGCTCGCTGGGCCTGGACATCGCCCTCGGCATCGGCG
GTCTGCCAAAGGGCCGTATCGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACGCTGACCCTGTCGGTCATCGCC
GAGGCCCAGAAGAACGGCGCCACCTGCGCCTTCGTCGACGCCGAGCATGCCCTCGACCCTGAGTACGCTGGCAAGCTCGG
CGTCAACGTCGATGACCTGCTGGTCTCGCAGCCAGACACTGGCGAACAGGCCCTGGAAATCACCGATATGCTGGTGCGTT
CCAACGCTGTCGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAGGCCCGTCTGATGTCTCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTTGGTAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCGGTCCGTTTGGACATCCGTCGTACTGGCGCTGTGAAGGAAGGTGACGAAGTGGTGGGCAGTGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTTTCGCCACCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCGTAACGGCGAGATCATCGACTTGGGCGTCGCCCAAGGTCTGGTCGAGAAGTCCGGCGCCTGGTACAGCTATCAGG
GCAACAAGATCGGCCAAGGCAAGGCCAACGCTGCCAAGTATTTGCAAGAGAACCCGGCCATCGGTTCGGAAATCGAGAAG
CAGATTCGTGAGAAGCTGCTGACCTCCGGCGCTGTCGCCGCTGCTGGCAAGGCCGCCGCCGCTGAAGCTGATGCCGACGA
TATGGCTGATGCTGAAGCCGGTTATTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAGGGCGCAGTCATGCG
CATGGGCGATCACGAACGCCAGGCCATCCCGGCCATCTCCACCGGCTCGCTGGGCCTGGACATCGCCCTCGGCATCGGCG
GTCTGCCAAAGGGCCGTATCGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACGCTGACCCTGTCGGTCATCGCC
GAGGCCCAGAAGAACGGCGCCACCTGCGCCTTCGTCGACGCCGAGCATGCCCTCGACCCTGAGTACGCTGGCAAGCTCGG
CGTCAACGTCGATGACCTGCTGGTCTCGCAGCCAGACACTGGCGAACAGGCCCTGGAAATCACCGATATGCTGGTGCGTT
CCAACGCTGTCGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAGGCCCGTCTGATGTCTCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTTGGTAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCGGTCCGTTTGGACATCCGTCGTACTGGCGCTGTGAAGGAAGGTGACGAAGTGGTGGGCAGTGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTTTCGCCACCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCGTAACGGCGAGATCATCGACTTGGGCGTCGCCCAAGGTCTGGTCGAGAAGTCCGGCGCCTGGTACAGCTATCAGG
GCAACAAGATCGGCCAAGGCAAGGCCAACGCTGCCAAGTATTTGCAAGAGAACCCGGCCATCGGTTCGGAAATCGAGAAG
CAGATTCGTGAGAAGCTGCTGACCTCCGGCGCTGTCGCCGCTGCTGGCAAGGCCGCCGCCGCTGAAGCTGATGCCGACGA
TATGGCTGATGCTGAAGCCGGTTATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.