Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMGF5_RS02860 Genome accession   NZ_CP179898
Coordinates   631654..632721 (-) Length   355 a.a.
NCBI ID   WP_046788327.1    Uniprot ID   A0A3R8UYA6
Organism   Pseudomonas sp. BNK-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 626654..637721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGF5_RS02820 (ACMGF5_02820) - 626897..627259 (-) 363 WP_046787960.1 diacylglycerol kinase -
  ACMGF5_RS02825 (ACMGF5_02825) erdR 627333..627983 (-) 651 WP_012315844.1 response regulator transcription factor ErdR -
  ACMGF5_RS02830 (ACMGF5_02830) - 628162..628872 (-) 711 WP_115274052.1 tRNA-uridine aminocarboxypropyltransferase -
  ACMGF5_RS02835 (ACMGF5_02835) - 628954..629097 (-) 144 WP_158621143.1 hypothetical protein -
  ACMGF5_RS02840 (ACMGF5_02840) - 629096..629515 (+) 420 WP_012315846.1 quorum-sensing-regulated virulence factor family protein -
  ACMGF5_RS02845 (ACMGF5_02845) - 629516..629719 (-) 204 WP_046787958.1 hypothetical protein -
  ACMGF5_RS02850 (ACMGF5_02850) - 630022..631140 (+) 1119 WP_414157557.1 LOG family protein -
  ACMGF5_RS02855 (ACMGF5_02855) recX 631166..631636 (-) 471 WP_046788328.1 recombination regulator RecX -
  ACMGF5_RS02860 (ACMGF5_02860) recA 631654..632721 (-) 1068 WP_046788327.1 recombinase RecA Machinery gene
  ACMGF5_RS02865 (ACMGF5_02865) - 632825..633307 (-) 483 WP_012315851.1 CinA family protein -
  ACMGF5_RS02870 (ACMGF5_02870) - 633414..633749 (-) 336 WP_115274050.1 phage holin family protein -
  ACMGF5_RS02875 (ACMGF5_02875) - 633952..634698 (-) 747 WP_046788325.1 S24 family peptidase -
  ACMGF5_RS02880 (ACMGF5_02880) mutS 634838..637411 (+) 2574 WP_119687643.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37555.00 Da        Isoelectric Point: 5.8819

>NTDB_id=1093538 ACMGF5_RS02860 WP_046788327.1 631654..632721(-) (recA) [Pseudomonas sp. BNK-15]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERTGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYAYQGNKIGQGKANAAKYLQENPAIGAEIEK
QIREKLLKAGVVAEAGKAAAADAKADDVADADAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1093538 ACMGF5_RS02860 WP_046788327.1 631654..632721(-) (recA) [Pseudomonas sp. BNK-15]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAAGGCGCGGTCATGCG
CATGGGCGATCACGAGCGCACCGGCATTCCGGCCATTTCTACCGGCTCCCTGGGCCTGGACATCGCTCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAGATCTATGGCCCGGAGTCTTCGGGTAAAACCACACTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAAAGCGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCTCTCGACCCAGAGTACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAAATTACCGACATGCTGGTGCGTT
CCAACGCCGTTGACGTAATCATCGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCAGAAATCGAAGGCGAGATGGGTGAC
ATGCACGTTGGCCTCCAGGCCCGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGTCGTACTGGTGCAGTCAAGGAAGGCGACGAAGTCGTCGGCAGCGAA
ACCCGCGTCAAAATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCTGAGTTCCAGATTCTTTACGGTAAGGGTAT
CTACCGTAACGGCGAAATCATTGACCTGGGCGTTGCTCAAGGGTTGGTCGAGAAGTCGGGTGCCTGGTATGCCTACCAGG
GCAACAAGATCGGCCAAGGCAAGGCTAACGCAGCCAAGTACCTGCAAGAGAACCCGGCCATTGGTGCCGAGATCGAGAAG
CAGATTCGCGAGAAGCTGCTCAAGGCGGGTGTTGTTGCCGAAGCGGGCAAGGCTGCTGCAGCCGATGCCAAAGCCGACGA
CGTGGCTGACGCCGACGCCGGTTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R8UYA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

89.205

99.155

0.885
  recA Acinetobacter baylyi ADP1

76.453

92.113

0.704
  recA Acinetobacter baumannii D1279779

74.924

93.239

0.699
  recA Vibrio cholerae strain A1552

72.222

96.338

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.222

96.338

0.696
  recA Glaesserella parasuis strain SC1401

69.429

98.592

0.685
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

70.988

91.268

0.648
  recA Neisseria gonorrhoeae MS11

70.988

91.268

0.648
  recA Neisseria gonorrhoeae strain FA1090

70.988

91.268

0.648
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.473

94.085

0.597
  recA Helicobacter pylori strain NCTC11637

62.997

92.113

0.58
  recA Helicobacter pylori 26695

62.385

92.113

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

93.239

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.423

0.566
  recA Streptococcus pyogenes NZ131

55.182

100

0.555
  recA Streptococcus mutans UA159

55.211

100

0.552
  recA Streptococcus mitis SK321

55.241

99.437

0.549
  recA Streptococcus mitis NCTC 12261

56.268

96.62

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Streptococcus pneumoniae Rx1

58.282

91.831

0.535
  recA Streptococcus pneumoniae D39

58.282

91.831

0.535
  recA Streptococcus pneumoniae R6

58.282

91.831

0.535
  recA Streptococcus pneumoniae TIGR4

58.282

91.831

0.535
  recA Lactococcus lactis subsp. cremoris KW2

56.966

90.986

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

91.831

0.51

Multiple sequence alignment