Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMGGS_RS00590 Genome accession   NZ_CP179893
Coordinates   109066..110130 (-) Length   354 a.a.
NCBI ID   WP_414164603.1    Uniprot ID   -
Organism   Superficieibacter sp. BNK-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104066..115130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGS_RS00575 (ACMGGS_00575) csrA 105133..105318 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  ACMGGS_RS00580 (ACMGGS_00580) alaS 105677..108304 (-) 2628 WP_414164601.1 alanine--tRNA ligase -
  ACMGGS_RS00585 (ACMGGS_00585) recX 108433..108933 (-) 501 WP_414164602.1 recombination regulator RecX -
  ACMGGS_RS00590 (ACMGGS_00590) recA 109066..110130 (-) 1065 WP_414164603.1 recombinase RecA Machinery gene
  ACMGGS_RS00595 (ACMGGS_00595) pncC 110222..110719 (-) 498 WP_414164604.1 nicotinamide-nucleotide amidase -
  ACMGGS_RS00600 (ACMGGS_00600) - 110848..111726 (-) 879 WP_414164605.1 metal ABC transporter substrate-binding protein -
  ACMGGS_RS00605 (ACMGGS_00605) - 111742..112602 (-) 861 WP_414164606.1 metal ABC transporter permease -
  ACMGGS_RS00610 (ACMGGS_00610) - 112599..113255 (-) 657 WP_414164607.1 metal ABC transporter ATP-binding protein -
  ACMGGS_RS00615 (ACMGGS_00615) mltB 113526..114602 (-) 1077 WP_414164608.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38066.55 Da        Isoelectric Point: 4.9741

>NTDB_id=1093427 ACMGGS_RS00590 WP_414164603.1 109066..110130(-) (recA) [Superficieibacter sp. BNK-5]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINYHGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAITWLKENPAAAKEI
EKKVRELLLSNPSDKPDFVIDPNDENAAEAKEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1093427 ACMGGS_RS00590 WP_414164603.1 109066..110130(-) (recA) [Superficieibacter sp. BNK-5]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAAAAACAATTTGGCAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCGACCGGCTCGCTTTCGCTGGATATCGCGCTGGGTG
CAGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGGCCGGAATCCTCGGGTAAAACCACCCTGACCCTGCAGGTC
GTTGCCGCTGCTCAGCGCGAAGGCAAAACCTGTGCGTTCATCGACGCAGAACACGCGCTTGATCCGGTTTACGCACGTAA
ACTGGGCGTAGATATCGACAACCTGCTGTGTTCTCAGCCGGATACCGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CACGCTCTGGTGCAGTAGACGTTATCGTAGTCGACTCCGTGGCAGCCCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGTGATTCTCATATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAACTGGCGGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCCGTGCGTCTGGATATCCGCCGTATTGGTGCGGTGAAAGAGGGCGAGAACGTCGTCGGT
AGTGAAACCCGCGTTAAAGTGGTGAAAAACAAAATCGCTGCGCCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGTGA
AGGCATTAACTATCACGGCGAGCTGGTTGACCTCGGCGTGAAAGAGAAGCTGATTGAGAAAGCCGGTGCCTGGTATAGCT
ACAACGGCGACAAAATCGGTCAGGGTAAAGCGAATGCGATTACCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAGATC
GAGAAGAAAGTGCGTGAACTGCTGCTCAGCAACCCGAGCGACAAGCCGGACTTTGTGATTGATCCTAACGACGAAAACGC
GGCTGAAGCGAAAGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.94

93.785

0.797
  recA Vibrio cholerae strain A1552

84.94

93.785

0.797
  recA Acinetobacter baumannii D1279779

70.69

98.305

0.695
  recA Pseudomonas stutzeri DSM 10701

74.924

92.373

0.692
  recA Acinetobacter baylyi ADP1

73.574

94.068

0.692
  recA Glaesserella parasuis strain SC1401

69.653

97.74

0.681
  recA Neisseria gonorrhoeae MS11

69.939

92.09

0.644
  recA Neisseria gonorrhoeae MS11

69.939

92.09

0.644
  recA Neisseria gonorrhoeae strain FA1090

69.939

92.09

0.644
  recA Ralstonia pseudosolanacearum GMI1000

70.476

88.983

0.627
  recA Helicobacter pylori strain NCTC11637

61.721

95.198

0.588
  recA Helicobacter pylori 26695

61.424

95.198

0.585
  recA Streptococcus pneumoniae D39

63.158

91.243

0.576
  recA Streptococcus pneumoniae TIGR4

63.158

91.243

0.576
  recA Streptococcus pneumoniae R6

63.158

91.243

0.576
  recA Streptococcus pneumoniae Rx1

63.158

91.243

0.576
  recA Streptococcus mitis NCTC 12261

62.539

91.243

0.571
  recA Streptococcus mitis SK321

62.539

91.243

0.571
  recA Streptococcus pyogenes NZ131

62.154

91.808

0.571
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus mutans UA159

61.846

91.808

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.678

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.76

94.068

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.808

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.678

0.556

Multiple sequence alignment