Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMGE3_RS06315 Genome accession   NZ_CP179736
Coordinates   1221514..1222575 (+) Length   353 a.a.
NCBI ID   WP_414046567.1    Uniprot ID   -
Organism   Macrococcus sp. 18KM583     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1216514..1227575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE3_RS06290 (ACMGE3_06290) yfmH 1216904..1218178 (+) 1275 WP_414056114.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACMGE3_RS06295 (ACMGE3_06295) ymfI 1218171..1218881 (+) 711 WP_414056115.1 elongation factor P 5-aminopentanone reductase -
  ACMGE3_RS06300 (ACMGE3_06300) - 1218893..1219687 (+) 795 WP_414048018.1 DUF3388 domain-containing protein -
  ACMGE3_RS06305 (ACMGE3_06305) - 1219706..1220560 (+) 855 WP_414056116.1 helix-turn-helix domain-containing protein -
  ACMGE3_RS06310 (ACMGE3_06310) pgsA 1220589..1221170 (+) 582 WP_414056117.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACMGE3_RS06315 (ACMGE3_06315) recA 1221514..1222575 (+) 1062 WP_414046567.1 recombinase RecA Machinery gene
  ACMGE3_RS06320 (ACMGE3_06320) rny 1222791..1224347 (+) 1557 WP_414046566.1 ribonuclease Y -
  ACMGE3_RS06325 (ACMGE3_06325) - 1224473..1225063 (+) 591 WP_414056118.1 hypothetical protein -
  ACMGE3_RS06330 (ACMGE3_06330) - 1225075..1225848 (+) 774 WP_414056119.1 hypothetical protein -
  ACMGE3_RS06335 (ACMGE3_06335) - 1225845..1226636 (+) 792 WP_414048021.1 TIGR00282 family metallophosphoesterase -
  ACMGE3_RS06340 (ACMGE3_06340) - 1226653..1227153 (+) 501 WP_414056120.1 DUF3467 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38409.60 Da        Isoelectric Point: 4.9264

>NTDB_id=1093154 ACMGE3_RS06315 WP_414046567.1 1221514..1222575(+) (recA) [Macrococcus sp. 18KM583]
MSERQKALDTVIKNMEKSFGKGAVMKLGENTAHNVSAVSSGSITLDNALGIGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQKQGGIAAFIDAEHALDPVYAQKLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT
KIKIVKNKVAPPFKVAEVDIMYGQGISREGEMVDLGAEYEVLQKSGAWYSYEGERIGQGRENIKTYLRENPEVRDEIDMK
IRKAMGIGEDKDAPKTELPSEPETDDLFDDELV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1093154 ACMGE3_RS06315 WP_414046567.1 1221514..1222575(+) (recA) [Macrococcus sp. 18KM583]
ATGAGTGAACGTCAAAAAGCTTTAGATACTGTAATTAAAAATATGGAAAAATCTTTCGGTAAAGGTGCCGTAATGAAACT
TGGAGAGAATACAGCACATAATGTATCTGCAGTATCTTCTGGTTCTATTACGTTAGATAATGCGTTAGGTATAGGTGGAT
ACCCGAAAGGCAGAATCATTGAAATTTATGGTCCTGAGAGTTCTGGTAAAACAACTGTAGCATTACACGCGATTGCTGAA
GTGCAAAAACAAGGTGGGATTGCTGCATTTATTGATGCGGAGCATGCTTTAGATCCTGTATATGCTCAAAAATTAGGTGT
AGATATTGATAACTTATATTTATCTCAACCTGACCATGGTGAGCAAGGTTTAGAAATTGCAGAGGCATTTGTTCGTAGTG
GTGCTGTTGATATTATTGTAGTCGATTCAGTTGCTGCATTAACACCGAAGGCAGAAATCGAAGGTGAAATGGGTGACTCT
CATATGGGTCTTCAGGCACGCTTGATGTCTCAAGCATTACGTAAGTTATCTGGTGCAGTTTCAAAATCGAACACGATCGC
GATATTTATTAACCAAGTACGTGAAAAAATTGGTGTAATGTTTGGTAACCCTGAAACTACACCAGGTGGTCGTGCATTAA
AATTCTATTCATCAGTACGTTTAGAAGTTCGTCGTGCTGAACAGTTAAAGCAAGGACAAGACATCGTGGGTAATCGTACT
AAAATTAAAATTGTTAAAAATAAAGTAGCGCCGCCATTCAAAGTAGCAGAAGTGGATATTATGTATGGACAAGGTATTTC
ACGAGAAGGTGAAATGGTCGATTTAGGTGCAGAATATGAAGTTTTACAAAAATCTGGAGCTTGGTACTCATACGAAGGAG
AACGTATTGGTCAGGGTAGGGAGAATATTAAAACTTACTTACGTGAGAATCCTGAAGTACGTGATGAAATCGATATGAAG
ATTAGAAAAGCGATGGGTATCGGAGAAGATAAGGACGCTCCTAAAACAGAATTACCATCAGAACCTGAAACAGATGATTT
ATTTGATGATGAATTAGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.758

92.635

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

69.429

99.15

0.688
  recA Streptococcus pyogenes NZ131

66.189

98.867

0.654
  recA Streptococcus mutans UA159

65.07

100

0.654
  recA Streptococcus pneumoniae R6

62.568

100

0.649
  recA Streptococcus pneumoniae Rx1

62.568

100

0.649
  recA Streptococcus pneumoniae D39

62.568

100

0.649
  recA Streptococcus pneumoniae TIGR4

62.568

100

0.649
  recA Streptococcus mitis SK321

64.412

96.317

0.62
  recA Streptococcus mitis NCTC 12261

66.061

93.484

0.618
  recA Acinetobacter baylyi ADP1

63.93

96.601

0.618
  recA Acinetobacter baumannii D1279779

63.824

96.317

0.615
  recA Lactococcus lactis subsp. cremoris KW2

64.478

94.901

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.692

92.068

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.975

91.218

0.584
  recA Vibrio cholerae strain A1552

63.975

91.218

0.584
  recA Helicobacter pylori strain NCTC11637

60.117

96.601

0.581
  recA Neisseria gonorrhoeae MS11

62.577

92.351

0.578
  recA Neisseria gonorrhoeae MS11

62.577

92.351

0.578
  recA Neisseria gonorrhoeae strain FA1090

62.577

92.351

0.578
  recA Helicobacter pylori 26695

59.824

96.601

0.578
  recA Ralstonia pseudosolanacearum GMI1000

64.856

88.669

0.575
  recA Glaesserella parasuis strain SC1401

58.601

97.167

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

92.635

0.567
  recA Pseudomonas stutzeri DSM 10701

57.02

98.867

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.486

93.201

0.564

Multiple sequence alignment