Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ACMGE4_RS05335 | Genome accession | NZ_CP179735 |
| Coordinates | 997189..998250 (-) | Length | 353 a.a. |
| NCBI ID | WP_414046567.1 | Uniprot ID | - |
| Organism | Macrococcus sp. 18KM445 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 980300..1025358 | 997189..998250 | within | 0 |
Gene organization within MGE regions
Location: 980300..1025358
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMGE4_RS05260 (ACMGE4_05260) | - | 980300..982150 (-) | 1851 | WP_414046553.1 | ABC transporter ATP-binding protein | - |
| ACMGE4_RS05265 (ACMGE4_05265) | - | 982143..983858 (-) | 1716 | WP_414046554.1 | ABC transporter ATP-binding protein | - |
| ACMGE4_RS05270 (ACMGE4_05270) | - | 983992..984633 (+) | 642 | WP_414046555.1 | VTT domain-containing protein | - |
| ACMGE4_RS05275 (ACMGE4_05275) | - | 984743..986098 (+) | 1356 | Protein_1007 | IS1182 family transposase | - |
| ACMGE4_RS05280 (ACMGE4_05280) | - | 986234..986938 (-) | 705 | WP_414046556.1 | ABC transporter ATP-binding protein | - |
| ACMGE4_RS05285 (ACMGE4_05285) | - | 986931..987608 (-) | 678 | WP_414046557.1 | ABC transporter permease | - |
| ACMGE4_RS05290 (ACMGE4_05290) | - | 987668..987955 (-) | 288 | WP_414046558.1 | MTH1187 family thiamine-binding protein | - |
| ACMGE4_RS05295 (ACMGE4_05295) | - | 987955..988971 (-) | 1017 | WP_414046559.1 | ABC transporter substrate-binding protein | - |
| ACMGE4_RS05300 (ACMGE4_05300) | - | 989337..990323 (+) | 987 | WP_414046560.1 | NlpC/P60 family protein | - |
| ACMGE4_RS05305 (ACMGE4_05305) | - | 990371..991234 (-) | 864 | WP_414046561.1 | 2-oxoacid:ferredoxin oxidoreductase subunit beta | - |
| ACMGE4_RS05310 (ACMGE4_05310) | - | 991235..992968 (-) | 1734 | WP_414046562.1 | 2-oxoacid:acceptor oxidoreductase subunit alpha | - |
| ACMGE4_RS05315 (ACMGE4_05315) | - | 993075..993575 (-) | 501 | WP_414046563.1 | DUF3467 domain-containing protein | - |
| ACMGE4_RS05320 (ACMGE4_05320) | - | 993592..994383 (-) | 792 | WP_414046564.1 | TIGR00282 family metallophosphoesterase | - |
| ACMGE4_RS05325 (ACMGE4_05325) | - | 994380..995153 (-) | 774 | WP_414046565.1 | hypothetical protein | - |
| ACMGE4_RS05330 (ACMGE4_05330) | rny | 995417..996973 (-) | 1557 | WP_414046566.1 | ribonuclease Y | - |
| ACMGE4_RS05335 (ACMGE4_05335) | recA | 997189..998250 (-) | 1062 | WP_414046567.1 | recombinase RecA | Machinery gene |
| ACMGE4_RS05340 (ACMGE4_05340) | - | 998683..1000035 (-) | 1353 | Protein_1020 | IS1182 family transposase | - |
| ACMGE4_RS05345 (ACMGE4_05345) | pgsA | 1000151..1000732 (-) | 582 | WP_414046568.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| ACMGE4_RS05350 (ACMGE4_05350) | - | 1000767..1001621 (-) | 855 | WP_414046569.1 | helix-turn-helix domain-containing protein | - |
| ACMGE4_RS05355 (ACMGE4_05355) | - | 1001640..1002434 (-) | 795 | WP_414046570.1 | DUF3388 domain-containing protein | - |
| ACMGE4_RS05360 (ACMGE4_05360) | ymfI | 1002446..1003156 (-) | 711 | WP_414046571.1 | elongation factor P 5-aminopentanone reductase | - |
| ACMGE4_RS05365 (ACMGE4_05365) | yfmH | 1003149..1004423 (-) | 1275 | WP_414046572.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| ACMGE4_RS05370 (ACMGE4_05370) | yfmF | 1004420..1005649 (-) | 1230 | WP_414046573.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| ACMGE4_RS05375 (ACMGE4_05375) | - | 1005659..1006375 (-) | 717 | WP_414046574.1 | GntR family transcriptional regulator | - |
| ACMGE4_RS05380 (ACMGE4_05380) | - | 1006391..1008685 (-) | 2295 | WP_414046575.1 | DNA translocase FtsK | - |
| ACMGE4_RS05385 (ACMGE4_05385) | rnjB | 1008752..1010425 (-) | 1674 | WP_414046576.1 | ribonuclease J2 | - |
| ACMGE4_RS05390 (ACMGE4_05390) | - | 1010539..1010793 (-) | 255 | WP_414046577.1 | hypothetical protein | - |
| ACMGE4_RS05395 (ACMGE4_05395) | - | 1010858..1012051 (-) | 1194 | WP_414046578.1 | M16 family metallopeptidase | - |
| ACMGE4_RS05400 (ACMGE4_05400) | pnp | 1012112..1014220 (-) | 2109 | WP_414046579.1 | polyribonucleotide nucleotidyltransferase | - |
| ACMGE4_RS05405 (ACMGE4_05405) | rpsO | 1014332..1014601 (-) | 270 | WP_414046580.1 | 30S ribosomal protein S15 | - |
| ACMGE4_RS05410 (ACMGE4_05410) | - | 1014702..1015658 (-) | 957 | WP_414046581.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ACMGE4_RS05415 (ACMGE4_05415) | truB | 1015726..1016619 (-) | 894 | WP_414046582.1 | tRNA pseudouridine(55) synthase TruB | - |
| ACMGE4_RS05420 (ACMGE4_05420) | rbfA | 1016681..1017025 (-) | 345 | WP_414046583.1 | 30S ribosome-binding factor RbfA | - |
| ACMGE4_RS05425 (ACMGE4_05425) | - | 1017276..1018184 (-) | 909 | WP_414046584.1 | nuclease-related domain-containing protein | - |
| ACMGE4_RS05430 (ACMGE4_05430) | - | 1018313..1019272 (-) | 960 | WP_414046585.1 | IS30 family transposase | - |
| ACMGE4_RS05435 (ACMGE4_05435) | - | 1019497..1019760 (+) | 264 | WP_414046586.1 | hypothetical protein | - |
| ACMGE4_RS05440 (ACMGE4_05440) | - | 1020094..1020273 (-) | 180 | WP_414046587.1 | hypothetical protein | - |
| ACMGE4_RS05445 (ACMGE4_05445) | - | 1020275..1021291 (-) | 1017 | WP_414046588.1 | tyrosine-type recombinase/integrase | - |
| ACMGE4_RS05450 (ACMGE4_05450) | infB | 1021510..1023315 (-) | 1806 | Protein_1042 | translation initiation factor IF-2 | - |
| ACMGE4_RS05455 (ACMGE4_05455) | - | 1023501..1023675 (-) | 175 | Protein_1043 | translation initiation factor IF-2 N-terminal domain-containing protein | - |
| ACMGE4_RS05460 (ACMGE4_05460) | - | 1023668..1024000 (-) | 333 | WP_414046589.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| ACMGE4_RS05465 (ACMGE4_05465) | rnpM | 1023997..1024284 (-) | 288 | WP_414046590.1 | RNase P modulator RnpM | - |
| ACMGE4_RS05470 (ACMGE4_05470) | nusA | 1024294..1025358 (-) | 1065 | WP_414046591.1 | transcription termination factor NusA | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 38409.60 Da Isoelectric Point: 4.9264
>NTDB_id=1093122 ACMGE4_RS05335 WP_414046567.1 997189..998250(-) (recA) [Macrococcus sp. 18KM445]
MSERQKALDTVIKNMEKSFGKGAVMKLGENTAHNVSAVSSGSITLDNALGIGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQKQGGIAAFIDAEHALDPVYAQKLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT
KIKIVKNKVAPPFKVAEVDIMYGQGISREGEMVDLGAEYEVLQKSGAWYSYEGERIGQGRENIKTYLRENPEVRDEIDMK
IRKAMGIGEDKDAPKTELPSEPETDDLFDDELV
MSERQKALDTVIKNMEKSFGKGAVMKLGENTAHNVSAVSSGSITLDNALGIGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQKQGGIAAFIDAEHALDPVYAQKLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT
KIKIVKNKVAPPFKVAEVDIMYGQGISREGEMVDLGAEYEVLQKSGAWYSYEGERIGQGRENIKTYLRENPEVRDEIDMK
IRKAMGIGEDKDAPKTELPSEPETDDLFDDELV
Nucleotide
Download Length: 1062 bp
>NTDB_id=1093122 ACMGE4_RS05335 WP_414046567.1 997189..998250(-) (recA) [Macrococcus sp. 18KM445]
ATGAGTGAACGTCAAAAAGCTTTAGATACTGTAATTAAAAATATGGAAAAATCTTTCGGTAAAGGTGCCGTAATGAAACT
TGGAGAGAATACAGCACATAATGTATCTGCAGTATCTTCTGGTTCTATTACGTTAGATAATGCGTTAGGTATAGGTGGAT
ATCCGAAAGGCAGAATCATTGAAATTTATGGTCCTGAGAGTTCTGGTAAAACAACTGTAGCATTACACGCGATTGCTGAA
GTGCAAAAACAAGGTGGGATTGCTGCATTTATTGATGCGGAGCATGCTTTAGATCCTGTATATGCTCAAAAATTAGGTGT
AGATATTGATAACTTATATTTATCTCAACCTGACCATGGTGAGCAAGGTTTAGAAATTGCAGAGGCATTTGTTCGTAGTG
GTGCTGTTGATATTATTGTAGTCGATTCAGTTGCTGCATTAACACCGAAGGCAGAAATCGAAGGTGAAATGGGTGACTCT
CATATGGGTCTTCAGGCACGCTTGATGTCTCAAGCATTACGTAAGTTATCAGGTGCGGTTTCAAAATCGAACACGATCGC
GATATTTATTAACCAAGTACGTGAAAAAATTGGTGTAATGTTTGGTAACCCTGAAACTACACCAGGTGGTCGTGCATTAA
AATTCTATTCATCAGTACGTTTAGAAGTTCGTCGTGCTGAACAGTTAAAGCAAGGACAAGACATCGTGGGTAATCGTACT
AAAATTAAAATTGTTAAAAATAAAGTAGCGCCGCCATTCAAAGTAGCAGAAGTGGATATTATGTATGGACAAGGTATTTC
ACGAGAAGGTGAAATGGTCGATTTAGGTGCAGAATATGAAGTTTTACAAAAATCTGGAGCTTGGTACTCATACGAAGGAG
AACGTATTGGTCAGGGTAGAGAGAATATTAAAACTTACTTACGTGAGAATCCTGAAGTACGTGATGAAATCGATATGAAG
ATTAGAAAAGCGATGGGTATCGGAGAAGATAAGGACGCTCCTAAAACAGAATTACCATCAGAACCTGAAACAGATGATTT
ATTTGATGATGAATTAGTATAA
ATGAGTGAACGTCAAAAAGCTTTAGATACTGTAATTAAAAATATGGAAAAATCTTTCGGTAAAGGTGCCGTAATGAAACT
TGGAGAGAATACAGCACATAATGTATCTGCAGTATCTTCTGGTTCTATTACGTTAGATAATGCGTTAGGTATAGGTGGAT
ATCCGAAAGGCAGAATCATTGAAATTTATGGTCCTGAGAGTTCTGGTAAAACAACTGTAGCATTACACGCGATTGCTGAA
GTGCAAAAACAAGGTGGGATTGCTGCATTTATTGATGCGGAGCATGCTTTAGATCCTGTATATGCTCAAAAATTAGGTGT
AGATATTGATAACTTATATTTATCTCAACCTGACCATGGTGAGCAAGGTTTAGAAATTGCAGAGGCATTTGTTCGTAGTG
GTGCTGTTGATATTATTGTAGTCGATTCAGTTGCTGCATTAACACCGAAGGCAGAAATCGAAGGTGAAATGGGTGACTCT
CATATGGGTCTTCAGGCACGCTTGATGTCTCAAGCATTACGTAAGTTATCAGGTGCGGTTTCAAAATCGAACACGATCGC
GATATTTATTAACCAAGTACGTGAAAAAATTGGTGTAATGTTTGGTAACCCTGAAACTACACCAGGTGGTCGTGCATTAA
AATTCTATTCATCAGTACGTTTAGAAGTTCGTCGTGCTGAACAGTTAAAGCAAGGACAAGACATCGTGGGTAATCGTACT
AAAATTAAAATTGTTAAAAATAAAGTAGCGCCGCCATTCAAAGTAGCAGAAGTGGATATTATGTATGGACAAGGTATTTC
ACGAGAAGGTGAAATGGTCGATTTAGGTGCAGAATATGAAGTTTTACAAAAATCTGGAGCTTGGTACTCATACGAAGGAG
AACGTATTGGTCAGGGTAGAGAGAATATTAAAACTTACTTACGTGAGAATCCTGAAGTACGTGATGAAATCGATATGAAG
ATTAGAAAAGCGATGGGTATCGGAGAAGATAAGGACGCTCCTAAAACAGAATTACCATCAGAACCTGAAACAGATGATTT
ATTTGATGATGAATTAGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.