Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMGFA_RS05305 Genome accession   NZ_CP179725
Coordinates   1000543..1001604 (+) Length   353 a.a.
NCBI ID   WP_414043296.1    Uniprot ID   -
Organism   Macrococcus sp. JEK85     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 995543..1006604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGFA_RS05280 (ACMGFA_05280) yfmH 995903..997177 (+) 1275 WP_414049497.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACMGFA_RS05285 (ACMGFA_05285) ymfI 997143..997880 (+) 738 WP_414043300.1 elongation factor P 5-aminopentanone reductase -
  ACMGFA_RS05290 (ACMGFA_05290) - 997892..998686 (+) 795 WP_414043299.1 DUF3388 domain-containing protein -
  ACMGFA_RS05295 (ACMGFA_05295) - 998705..999562 (+) 858 WP_414051329.1 RodZ domain-containing protein -
  ACMGFA_RS05300 (ACMGFA_05300) pgsA 999603..1000184 (+) 582 WP_414051330.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACMGFA_RS05305 (ACMGFA_05305) recA 1000543..1001604 (+) 1062 WP_414043296.1 recombinase RecA Machinery gene
  ACMGFA_RS05310 (ACMGFA_05310) rny 1001836..1003395 (+) 1560 WP_414049501.1 ribonuclease Y -
  ACMGFA_RS05315 (ACMGFA_05315) - 1003533..1004123 (+) 591 WP_414051331.1 hypothetical protein -
  ACMGFA_RS05320 (ACMGFA_05320) - 1004136..1004906 (+) 771 WP_414043293.1 hypothetical protein -
  ACMGFA_RS05325 (ACMGFA_05325) - 1004906..1005697 (+) 792 WP_414051332.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38346.58 Da        Isoelectric Point: 5.0982

>NTDB_id=1092921 ACMGFA_RS05305 WP_414043296.1 1000543..1001604(+) (recA) [Macrococcus sp. JEK85]
MSERQKALDTVIKNMEKSFGKGAVMKLGENTAHNVSAVSSGSITLDNALGIGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQKQGGIAAFIDAEHALDPVYAQKLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT
KIKVVKNKVAPPFKVAEVDIMYGQGISREGEMVDLGAEHEVLQKSGAWYSYEGERIGQGRENIKTYLRENPEVRDEIDVK
IRKAMGIGEDKDAQKVETPVEPPVEDLFDDELV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1092921 ACMGFA_RS05305 WP_414043296.1 1000543..1001604(+) (recA) [Macrococcus sp. JEK85]
ATGAGTGAACGTCAAAAAGCATTAGATACAGTTATTAAAAATATGGAGAAATCATTTGGTAAAGGTGCCGTTATGAAATT
AGGCGAAAATACTGCACATAATGTATCAGCAGTTTCTTCAGGGTCTATCACATTAGATAACGCTTTAGGTATAGGTGGTT
ATCCAAAAGGCCGTATTATTGAGATTTACGGTCCTGAGAGTTCAGGTAAAACAACTGTAGCACTTCACGCGATTGCTGAA
GTACAAAAGCAAGGGGGCATTGCTGCATTCATCGATGCTGAGCATGCGTTAGATCCAGTTTATGCACAAAAATTAGGTGT
AGATATCGATAATTTATATTTATCTCAACCTGACCATGGTGAACAAGGTTTAGAAATCGCAGAAGCATTTGTACGTAGTG
GTGCCGTTGATATTATCGTAGTAGATTCAGTTGCTGCATTAACACCTAAAGCTGAGATTGAAGGTGAAATGGGAGACTCT
CATATGGGACTTCAAGCACGTTTAATGTCTCAAGCTTTACGTAAATTATCAGGAGCTGTCTCTAAATCAAATACCATAGC
AATTTTCATCAACCAAGTACGTGAGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTCCGGGTGGACGAGCGCTTA
AGTTCTATTCGTCTGTACGTTTAGAAGTACGTCGAGCTGAACAATTAAAACAAGGTCAAGATATCGTCGGTAACCGTACG
AAGATCAAAGTTGTTAAGAATAAAGTAGCACCACCTTTTAAAGTAGCAGAAGTAGATATTATGTACGGTCAAGGTATTTC
ACGTGAAGGTGAAATGGTAGATTTAGGTGCAGAGCATGAAGTATTACAAAAGTCGGGTGCTTGGTATTCTTATGAAGGCG
AACGTATTGGACAAGGTCGTGAAAACATTAAGACTTATTTACGTGAAAATCCTGAAGTACGTGATGAAATCGATGTGAAG
ATTCGTAAGGCAATGGGTATTGGTGAAGATAAAGATGCTCAAAAAGTAGAAACACCAGTTGAACCTCCAGTTGAAGATTT
ATTCGATGATGAATTAGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.064

92.635

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

72.477

92.635

0.671
  recA Streptococcus mutans UA159

64.507

100

0.649
  recA Streptococcus pneumoniae D39

63.408

100

0.643
  recA Streptococcus pneumoniae TIGR4

63.408

100

0.643
  recA Streptococcus pneumoniae R6

63.408

100

0.643
  recA Streptococcus pneumoniae Rx1

63.408

100

0.643
  recA Streptococcus pyogenes NZ131

68.902

92.918

0.64
  recA Acinetobacter baylyi ADP1

64.706

96.317

0.623
  recA Streptococcus mitis SK321

66.364

93.484

0.62
  recA Streptococcus mitis NCTC 12261

66.364

93.484

0.62
  recA Acinetobacter baumannii D1279779

64.307

96.034

0.618
  recA Lactococcus lactis subsp. cremoris KW2

64.776

94.901

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64

92.068

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.596

91.218

0.589
  recA Vibrio cholerae strain A1552

64.596

91.218

0.589
  recA Neisseria gonorrhoeae MS11

62.883

92.351

0.581
  recA Neisseria gonorrhoeae MS11

62.883

92.351

0.581
  recA Neisseria gonorrhoeae strain FA1090

62.883

92.351

0.581
  recA Glaesserella parasuis strain SC1401

57.955

99.717

0.578
  recA Ralstonia pseudosolanacearum GMI1000

65.176

88.669

0.578
  recA Pseudomonas stutzeri DSM 10701

57.88

98.867

0.572
  recA Helicobacter pylori strain NCTC11637

61.398

93.201

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.909

93.484

0.569
  recA Helicobacter pylori 26695

61.094

93.201

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

92.635

0.567

Multiple sequence alignment