Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACMGFB_RS03025 Genome accession   NZ_CP179724
Coordinates   594291..595352 (+) Length   353 a.a.
NCBI ID   WP_414049500.1    Uniprot ID   -
Organism   Macrococcus sp. 21M1142     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 589291..600352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGFB_RS03000 (ACMGFB_03000) yfmH 589650..590924 (+) 1275 WP_414049497.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACMGFB_RS03005 (ACMGFB_03005) ymfI 590917..591627 (+) 711 WP_414049498.1 elongation factor P 5-aminopentanone reductase -
  ACMGFB_RS03010 (ACMGFB_03010) - 591639..592433 (+) 795 WP_414043299.1 DUF3388 domain-containing protein -
  ACMGFB_RS03015 (ACMGFB_03015) - 592452..593309 (+) 858 WP_414043298.1 RodZ domain-containing protein -
  ACMGFB_RS03020 (ACMGFB_03020) pgsA 593350..593931 (+) 582 WP_414049499.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACMGFB_RS03025 (ACMGFB_03025) recA 594291..595352 (+) 1062 WP_414049500.1 recombinase RecA Machinery gene
  ACMGFB_RS03030 (ACMGFB_03030) rny 595584..597143 (+) 1560 WP_414049501.1 ribonuclease Y -
  ACMGFB_RS03035 (ACMGFB_03035) - 597281..597871 (+) 591 WP_414049502.1 hypothetical protein -
  ACMGFB_RS03040 (ACMGFB_03040) - 597884..598654 (+) 771 WP_414043293.1 hypothetical protein -
  ACMGFB_RS03045 (ACMGFB_03045) - 598654..599445 (+) 792 WP_414043292.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38332.55 Da        Isoelectric Point: 5.0982

>NTDB_id=1092887 ACMGFB_RS03025 WP_414049500.1 594291..595352(+) (recA) [Macrococcus sp. 21M1142]
MSERQKALDTVIKNMEKSFGKGAVMKLGENTAHNVSAVSSGSITLDNALGIGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQKQGGIAAFIDAEHALDPVYAQKLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT
KIKVVKNKVAPPFKVAEVDIMYGQGISREGEMVDLGAEHEVLQKSGAWYSYEGERIGQGRENIKTYLRENPEVRDEIDVK
IRKAMGIGEDKDAQKVESPVEPPVEDLFDDELV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1092887 ACMGFB_RS03025 WP_414049500.1 594291..595352(+) (recA) [Macrococcus sp. 21M1142]
ATGAGTGAACGTCAAAAAGCATTAGATACAGTTATTAAAAATATGGAGAAATCATTTGGTAAAGGTGCCGTTATGAAATT
AGGCGAAAATACTGCACATAATGTATCAGCAGTTTCTTCAGGGTCTATCACATTAGATAACGCTTTAGGTATAGGTGGTT
ATCCAAAAGGCCGTATTATTGAGATTTACGGTCCTGAGAGTTCAGGTAAAACAACTGTAGCACTTCACGCGATTGCTGAA
GTACAAAAGCAAGGGGGTATTGCTGCATTCATCGATGCTGAGCATGCGTTAGATCCAGTTTATGCACAAAAATTAGGTGT
AGATATCGATAATTTATATTTATCTCAACCTGACCATGGTGAACAAGGTTTAGAAATCGCAGAAGCATTTGTACGTAGTG
GTGCCGTTGATATTATCGTAGTAGATTCAGTTGCTGCATTAACACCTAAAGCTGAGATTGAAGGTGAAATGGGAGACTCT
CATATGGGACTTCAAGCACGTTTAATGTCTCAAGCTTTACGTAAATTATCAGGAGCTGTCTCTAAATCGAATACCATAGC
AATTTTCATCAACCAAGTACGTGAGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTCCGGGTGGACGAGCGCTTA
AGTTCTATTCGTCTGTACGTTTAGAAGTACGTCGAGCTGAACAATTAAAACAAGGTCAAGATATCGTCGGTAACCGTACG
AAGATCAAAGTTGTTAAGAATAAAGTAGCACCACCTTTTAAAGTAGCAGAGGTAGATATTATGTACGGTCAAGGTATTTC
ACGTGAAGGTGAAATGGTAGATTTAGGTGCAGAGCATGAAGTATTACAAAAGTCGGGTGCTTGGTATTCTTATGAAGGCG
AACGTATTGGACAAGGTCGTGAAAACATTAAGACTTATTTACGTGAAAATCCTGAAGTACGTGATGAAATCGATGTGAAG
ATTCGTAAGGCAATGGGTATTGGTGAAGATAAAGATGCTCAAAAAGTAGAATCACCAGTTGAACCTCCAGTTGAAGATTT
ATTCGATGATGAATTAGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.064

92.635

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

72.477

92.635

0.671
  recA Streptococcus mutans UA159

64.789

100

0.652
  recA Streptococcus mitis NCTC 12261

63.435

100

0.649
  recA Streptococcus pneumoniae R6

63.408

100

0.643
  recA Streptococcus pneumoniae TIGR4

63.408

100

0.643
  recA Streptococcus pneumoniae Rx1

63.408

100

0.643
  recA Streptococcus pneumoniae D39

63.408

100

0.643
  recA Streptococcus pyogenes NZ131

68.902

92.918

0.64
  recA Streptococcus mitis SK321

66.364

93.484

0.62
  recA Acinetobacter baylyi ADP1

64.412

96.317

0.62
  recA Acinetobacter baumannii D1279779

64.307

96.034

0.618
  recA Lactococcus lactis subsp. cremoris KW2

64.776

94.901

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64

92.068

0.589
  recA Vibrio cholerae strain A1552

64.596

91.218

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.596

91.218

0.589
  recA Glaesserella parasuis strain SC1401

58.239

99.717

0.581
  recA Neisseria gonorrhoeae MS11

62.883

92.351

0.581
  recA Neisseria gonorrhoeae MS11

62.883

92.351

0.581
  recA Neisseria gonorrhoeae strain FA1090

62.883

92.351

0.581
  recA Ralstonia pseudosolanacearum GMI1000

65.176

88.669

0.578
  recA Helicobacter pylori strain NCTC11637

61.398

93.201

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.909

93.484

0.569
  recA Pseudomonas stutzeri DSM 10701

57.593

98.867

0.569
  recA Helicobacter pylori 26695

61.094

93.201

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

92.635

0.567

Multiple sequence alignment