Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACGHP4_RS18355 Genome accession   NZ_AP031413
Coordinates   3976303..3977442 (-) Length   379 a.a.
NCBI ID   WP_103732330.1    Uniprot ID   -
Organism   Blautia parvula strain f21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3971303..3982442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHP4_RS18335 (F210042A8_36390) xerD 3972141..3973025 (-) 885 WP_033141164.1 site-specific tyrosine recombinase XerD -
  ACGHP4_RS18340 (F210042A8_36400) - 3973241..3973810 (-) 570 WP_033141165.1 stage II sporulation protein M -
  ACGHP4_RS18345 (F210042A8_36410) rny 3974004..3975563 (-) 1560 WP_033141166.1 ribonuclease Y -
  ACGHP4_RS18350 (F210042A8_36420) - 3975692..3976303 (-) 612 WP_103732329.1 regulatory protein RecX -
  ACGHP4_RS18355 (F210042A8_36430) recA 3976303..3977442 (-) 1140 WP_103732330.1 recombinase RecA Machinery gene
  ACGHP4_RS18360 (F210042A8_36440) - 3977798..3978055 (-) 258 WP_033141169.1 spore coat protein -
  ACGHP4_RS18365 (F210042A8_36450) - 3978068..3978253 (-) 186 WP_033141170.1 hypothetical protein -
  ACGHP4_RS18370 (F210042A8_36460) - 3978341..3980341 (-) 2001 WP_033141171.1 ABC transporter permease -
  ACGHP4_RS18375 (F210042A8_36470) - 3980331..3981098 (-) 768 WP_033141172.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40579.42 Da        Isoelectric Point: 6.2761

>NTDB_id=109172 ACGHP4_RS18355 WP_103732330.1 3976303..3977442(-) (recA) [Blautia parvula strain f21]
MVKEDKLKALDAALGQIEKQFGKGSVMKLGDSSVHMNVETVPTGSLSLDIALGLGGIPKGRIVEVYGPESSGKTTVALHM
VAEVQKRGGIAGFIDAEHALDPVYAKHIGVDVDNLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPRAEIEGDM
GDSHVGLQARLMSQALRKLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRIEALKQAGEIVG
NRTRIKVVKNKIAPPFKEAEFDIMFGQGISKAGDILDLAADLGIINKSGAWYAYKDGKIGQGRENAKQYLKENPDVAAEV
EAKVREHYGLVEGNTEEEDKKGAKEEKKADAKASDTKAPDMKAAEAPAAQGAKKENGVV

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=109172 ACGHP4_RS18355 WP_103732330.1 3976303..3977442(-) (recA) [Blautia parvula strain f21]
ATGGTCAAAGAAGATAAATTAAAAGCCCTGGATGCGGCCCTGGGACAGATTGAGAAGCAGTTTGGTAAAGGCTCTGTTAT
GAAACTAGGCGATTCCTCTGTACATATGAATGTGGAGACAGTACCTACAGGTTCTCTCAGCCTTGACATTGCACTGGGTC
TGGGAGGCATCCCGAAAGGAAGGATCGTAGAGGTCTACGGTCCGGAATCCAGCGGTAAGACCACCGTGGCGCTGCATATG
GTGGCTGAGGTACAGAAAAGAGGCGGAATTGCCGGATTTATTGATGCAGAGCATGCTCTGGACCCGGTATATGCCAAGCA
TATCGGCGTGGATGTGGACAATCTCTATATTTCACAGCCGGATAACGGGGAGCAGGCCCTGGAGATCACAGAGACTATGG
TGCGTTCCGGTGCTGTGGACATTGTGATCGTGGACTCTGTTGCGGCTCTGGTTCCGAGAGCGGAGATCGAGGGTGATATG
GGTGATTCCCATGTGGGTCTGCAGGCGCGTCTGATGTCACAGGCTCTCCGTAAACTGACGGCTGTCATCAGCAAATCCAA
CTGTATCGTTATCTTTATCAATCAGCTCCGTGAGAAAGTCGGAGTTATGTTCGGCAACCCGGAGACCACCACAGGCGGCC
GTGCCCTGAAGTTTTATTCCTCCATCCGTCTGGATGTCAGAAGGATTGAAGCTCTGAAGCAGGCCGGAGAGATCGTTGGA
AACCGTACCAGGATCAAGGTAGTTAAGAATAAGATCGCGCCTCCTTTTAAAGAGGCAGAGTTTGATATCATGTTCGGCCA
GGGAATCTCCAAAGCCGGTGATATCCTGGATCTGGCAGCAGATCTGGGCATTATCAATAAAAGCGGCGCATGGTATGCAT
ATAAGGACGGAAAGATCGGCCAGGGACGTGAAAATGCAAAACAGTACCTGAAAGAAAATCCGGACGTGGCAGCAGAAGTG
GAAGCAAAAGTCAGGGAACACTACGGACTTGTTGAGGGAAATACAGAAGAAGAAGACAAGAAAGGTGCAAAAGAGGAGAA
AAAGGCTGACGCCAAAGCCTCTGACACAAAAGCACCGGATATGAAGGCCGCGGAGGCACCTGCAGCGCAGGGTGCGAAAA
AGGAAAATGGGGTTGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.552

86.016

0.607
  recA Streptococcus mutans UA159

63.277

93.404

0.591
  recA Streptococcus pneumoniae D39

64.451

91.293

0.588
  recA Streptococcus pneumoniae Rx1

64.451

91.293

0.588
  recA Streptococcus pneumoniae R6

64.451

91.293

0.588
  recA Streptococcus pneumoniae TIGR4

64.451

91.293

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

64.265

91.557

0.588
  recA Streptococcus mitis SK321

65.976

89.182

0.588
  recA Streptococcus mitis NCTC 12261

65.385

89.182

0.583
  recA Neisseria gonorrhoeae MS11

62.573

90.237

0.565
  recA Neisseria gonorrhoeae MS11

62.573

90.237

0.565
  recA Neisseria gonorrhoeae strain FA1090

62.573

90.237

0.565
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.635

85.224

0.559
  recA Vibrio cholerae strain A1552

65.635

85.224

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.634

86.544

0.559
  recA Lactococcus lactis subsp. cremoris KW2

64.134

86.807

0.557
  recA Glaesserella parasuis strain SC1401

65.528

84.96

0.557
  recA Pseudomonas stutzeri DSM 10701

63.363

87.863

0.557
  recA Acinetobacter baumannii D1279779

64.815

85.488

0.554
  recA Streptococcus pyogenes NZ131

63.636

87.071

0.554
  recA Acinetobacter baylyi ADP1

64.506

85.488

0.551
  recA Helicobacter pylori strain NCTC11637

63.222

86.807

0.549
  recA Helicobacter pylori 26695

62.918

86.807

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.062

89.446

0.546
  recA Ralstonia pseudosolanacearum GMI1000

64.331

82.85

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.112

84.96

0.528

Multiple sequence alignment