Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACL2XJ_RS01215 Genome accession   NZ_CP178737
Coordinates   252486..253556 (-) Length   356 a.a.
NCBI ID   WP_132926204.1    Uniprot ID   -
Organism   Sodalis sp. RH16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 247486..258556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XJ_RS01200 (ACL2XJ_01200) csrA 248630..248815 (-) 186 WP_132926210.1 carbon storage regulator CsrA -
  ACL2XJ_RS01205 (ACL2XJ_01205) alaS 249066..251693 (-) 2628 WP_413725409.1 alanine--tRNA ligase -
  ACL2XJ_RS01210 (ACL2XJ_01210) - 251896..252435 (-) 540 WP_413725410.1 regulatory protein RecX -
  ACL2XJ_RS01215 (ACL2XJ_01215) recA 252486..253556 (-) 1071 WP_132926204.1 recombinase RecA Machinery gene
  ACL2XJ_RS01220 (ACL2XJ_01220) pncC 253795..254283 (-) 489 WP_132926202.1 nicotinamide-nucleotide amidase -
  ACL2XJ_RS01225 (ACL2XJ_01225) - 254690..255460 (+) 771 WP_413725411.1 amino acid ABC transporter substrate-binding protein -
  ACL2XJ_RS01230 (ACL2XJ_01230) - 255488..256147 (+) 660 WP_132926198.1 amino acid ABC transporter permease -
  ACL2XJ_RS01235 (ACL2XJ_01235) - 256305..257315 (-) 1011 WP_413725412.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38257.80 Da        Isoelectric Point: 4.9762

>NTDB_id=1091225 ACL2XJ_RS01215 WP_132926204.1 252486..253556(-) (recA) [Sodalis sp. RH16]
MAIDENKQKALAAALSQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLMV
IASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEVVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINVHGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKSNACVFLKERPEIAAEL
DKKLRDMLLHNTTDAGFAGESESFDESTANESSEEM

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1091225 ACL2XJ_RS01215 WP_132926204.1 252486..253556(-) (recA) [Sodalis sp. RH16]
ATGGCTATTGATGAGAATAAACAAAAGGCGTTGGCGGCGGCATTAAGCCAGATTGAAAAACAATTTGGCAAAGGCTCGAT
CATGCGTCTCGGTGAAGATCGGTCAATGGATGTCGAGACGATCTCCACAGGTTCTCTTTCCCTTGATATTGCGCTGGGCG
CAGGCGGTTTGCCCATGGGGCGCATAGTTGAAATCTATGGGCCGGAATCCTCGGGTAAAACAACGCTGACCCTGATGGTC
ATCGCCTCCGCGCAGCGCGAAGGTAAAACATGCGCATTTATCGATGCCGAGCATGCCCTGGATCCCATCTATGCCAAAAA
ATTGGGTGTGGATATCGATAACCTGCTGTGTTCACAGCCGGACACCGGTGAACAGGCCCTGGAAATTTGTGATGCATTAA
CCCGCTCCGGCGCGGTGGATGTCATTATCGTCGACTCCGTCGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGATTCCCATATGGGACTGGCGGCGCGCATGATGAGCCAGGCCATGCGTAAACTGGCGGGCAATCTCAAAAACGCCAA
TACCCTGCTGATCTTTATCAACCAGATCCGTATGAAAATCGGCGTTATGTTCGGGAATCCCGAAACCACTACCGGCGGTA
ACGCCCTGAAGTTTTACGCGTCAGTACGCCTTGATATCCGCCGCATCGGCTCCATCAAAGAGGGCGAAGTGGTGGTGGGT
AGCGAGACGCGCGTGAAAGTGGTGAAAAACAAGGTAGCCGCGCCCTTTAAACAGGCTGAATTCCAGATTCTTTATGGGGA
AGGCATCAACGTCCACGGCGAATTGGTCGATCTGGGCGTCAAGCATAAGCTGATTGAAAAAGCCGGCGCCTGGTACAGTT
ACAACGGCGAAAAAATCGGCCAAGGCAAGTCCAACGCCTGCGTCTTCCTCAAAGAACGCCCCGAGATTGCCGCCGAGCTG
GATAAAAAATTGCGGGATATGTTATTGCACAATACCACTGACGCCGGTTTTGCCGGTGAGAGCGAAAGTTTTGATGAAAG
CACCGCCAATGAAAGCAGTGAGGAAATGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.451

92.135

0.778
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.451

92.135

0.778
  recA Glaesserella parasuis strain SC1401

69.801

98.596

0.688
  recA Pseudomonas stutzeri DSM 10701

74.618

91.854

0.685
  recA Acinetobacter baumannii D1279779

70.588

95.506

0.674
  recA Acinetobacter baylyi ADP1

71.386

93.258

0.666
  recA Neisseria gonorrhoeae MS11

70.062

91.011

0.638
  recA Neisseria gonorrhoeae MS11

70.062

91.011

0.638
  recA Neisseria gonorrhoeae strain FA1090

70.062

91.011

0.638
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.36

0.615
  recA Streptococcus pneumoniae Rx1

63.777

90.73

0.579
  recA Streptococcus pneumoniae R6

63.777

90.73

0.579
  recA Streptococcus pneumoniae D39

63.777

90.73

0.579
  recA Streptococcus pneumoniae TIGR4

63.777

90.73

0.579
  recA Helicobacter pylori 26695

62.048

93.258

0.579
  recA Helicobacter pylori strain NCTC11637

61.747

93.258

0.576
  recA Streptococcus mutans UA159

62.462

91.292

0.57
  recA Streptococcus mitis SK321

62.848

90.73

0.57
  recA Streptococcus mitis NCTC 12261

62.848

90.73

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.854

0.567
  recA Streptococcus pyogenes NZ131

62.154

91.292

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.73

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

93.539

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.292

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.169

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.123

91.573

0.551

Multiple sequence alignment