Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACL2XM_RS16350 Genome accession   NZ_CP178733
Coordinates   3534131..3535201 (-) Length   356 a.a.
NCBI ID   WP_410016319.1    Uniprot ID   -
Organism   Sodalis sp. RH20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3529131..3540201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL2XM_RS16335 (ACL2XM_16335) csrA 3530382..3530567 (-) 186 WP_132926210.1 carbon storage regulator CsrA -
  ACL2XM_RS16340 (ACL2XM_16340) alaS 3530818..3533445 (-) 2628 WP_410016317.1 alanine--tRNA ligase -
  ACL2XM_RS16345 (ACL2XM_16345) - 3533588..3534079 (-) 492 WP_410016318.1 regulatory protein RecX -
  ACL2XM_RS16350 (ACL2XM_16350) recA 3534131..3535201 (-) 1071 WP_410016319.1 recombinase RecA Machinery gene
  ACL2XM_RS16355 (ACL2XM_16355) pncC 3535311..3535799 (-) 489 WP_413722184.1 nicotinamide-nucleotide amidase -
  ACL2XM_RS16360 (ACL2XM_16360) - 3536088..3536858 (+) 771 WP_413722183.1 amino acid ABC transporter substrate-binding protein -
  ACL2XM_RS16365 (ACL2XM_16365) - 3536885..3537544 (+) 660 WP_410016322.1 amino acid ABC transporter permease -
  ACL2XM_RS16370 (ACL2XM_16370) - 3537615..3538628 (-) 1014 WP_413722182.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38209.72 Da        Isoelectric Point: 4.9023

>NTDB_id=1091149 ACL2XM_RS16350 WP_410016319.1 3534131..3535201(-) (recA) [Sodalis sp. RH20]
MAIDENKQKALAAALSQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGEVVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIRGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANACVFLKERPEIAAEL
DKKLRDMLLNSPETTSFAGESDDIDESAARESSEEA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1091149 ACL2XM_RS16350 WP_410016319.1 3534131..3535201(-) (recA) [Sodalis sp. RH20]
ATGGCTATTGATGAGAATAAACAAAAGGCGTTAGCAGCAGCGTTAAGCCAGATTGAAAAACAGTTTGGCAAGGGCTCTAT
CATGCGCCTGGGTGAAGATCGTTCAATGGATGTTGAAACAATCTCCACTGGTTCTCTTTCCCTTGATATTGCACTGGGCG
CCGGCGGCTTGCCCATGGGACGCATCGTTGAAATCTATGGGCCGGAATCGTCGGGTAAAACCACCCTGACCCTGCAGGTG
ATTGCCTCCGCGCAGCGTGAAGGTAAAACCTGCGCGTTTATCGATGCCGAGCACGCCCTTGATCCTATCTACGCAAAAAA
ACTTGGCGTGGATATCGACAACCTGCTGTGTTCGCAGCCCGACACCGGCGAACAGGCCCTGGAAATCTGCGACGCCCTGA
CCCGTTCCGGCGCGGTTGACGTTATCATCGTCGACTCCGTGGCGGCGCTGACCCCGAAAGCTGAAATCGAAGGCGAAATC
GGCGACTCGCACATGGGGCTTGCGGCACGTATGATGAGCCAGGCCATGCGTAAACTGGCGGGTAACCTGAAAAACGCCAA
TACGCTGTTGATATTTATCAACCAGATTCGCATGAAGATCGGCGTCATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCGCTGAAATTCTACGCTTCGGTACGTCTAGACATACGCCGCATCGGCTCCGTCAAAGAAGGCGAAGTGGTGGTGGGC
AGCGAAACACGCGTTAAAGTGGTGAAGAACAAAGTCGCCGCGCCGTTTAAGCAGGCTGAATTCCAAATCCTCTATGGCGA
GGGTATCAATATCCGCGGTGAACTGGTGGACTTGGGCGTTAAGCACAAACTCATCGAAAAAGCCGGGGCATGGTATAGCT
ACAACGGTGAAAAAATCGGTCAGGGCAAGGCCAATGCCTGCGTGTTCCTGAAGGAGCGCCCGGAAATTGCGGCGGAGCTG
GATAAAAAACTGCGTGATATGCTGTTAAACAGCCCTGAAACGACCAGTTTTGCCGGCGAAAGCGACGATATTGATGAAAG
CGCGGCCCGTGAGAGCAGTGAAGAGGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.737

99.157

0.801
  recA Vibrio cholerae strain A1552

80.737

99.157

0.801
  recA Pseudomonas stutzeri DSM 10701

71.884

96.91

0.697
  recA Glaesserella parasuis strain SC1401

70.085

98.596

0.691
  recA Acinetobacter baylyi ADP1

68.839

99.157

0.683
  recA Acinetobacter baumannii D1279779

72.644

92.416

0.671
  recA Neisseria gonorrhoeae MS11

67.442

96.629

0.652
  recA Neisseria gonorrhoeae MS11

67.442

96.629

0.652
  recA Neisseria gonorrhoeae strain FA1090

67.442

96.629

0.652
  recA Ralstonia pseudosolanacearum GMI1000

69.841

88.483

0.618
  recA Helicobacter pylori 26695

60.704

95.787

0.581
  recA Helicobacter pylori strain NCTC11637

60.411

95.787

0.579
  recA Streptococcus pneumoniae Rx1

63.467

90.73

0.576
  recA Streptococcus pneumoniae TIGR4

63.467

90.73

0.576
  recA Streptococcus pneumoniae R6

63.467

90.73

0.576
  recA Streptococcus pneumoniae D39

63.467

90.73

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.854

0.567
  recA Streptococcus mitis SK321

62.539

90.73

0.567
  recA Streptococcus mitis NCTC 12261

62.539

90.73

0.567
  recA Streptococcus mutans UA159

62.154

91.292

0.567
  recA Streptococcus pyogenes NZ131

61.846

91.292

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.76

93.539

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.169

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.61

90.73

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

91.292

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.123

91.573

0.551

Multiple sequence alignment