Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACJQW4_RS15075 Genome accession   NZ_CP178606
Coordinates   3183001..3184047 (+) Length   348 a.a.
NCBI ID   WP_241625114.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3178001..3189047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS15045 (ACJQW4_15045) rpsT 3178790..3179056 (+) 267 WP_131323587.1 30S ribosomal protein S20 -
  ACJQW4_RS15050 (ACJQW4_15050) - 3179205..3179939 (-) 735 WP_241625122.1 histidine phosphatase family protein -
  ACJQW4_RS15055 (ACJQW4_15055) - 3179992..3180849 (-) 858 WP_241625120.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACJQW4_RS15060 (ACJQW4_15060) - 3181031..3181468 (-) 438 WP_241625118.1 BLUF domain-containing protein -
  ACJQW4_RS15065 (ACJQW4_15065) - 3181746..3182420 (+) 675 WP_241625117.1 HAD-IA family hydrolase -
  ACJQW4_RS15070 (ACJQW4_15070) - 3182413..3182853 (+) 441 WP_241625116.1 RNA-binding S4 domain-containing protein -
  ACJQW4_RS15075 (ACJQW4_15075) recA 3183001..3184047 (+) 1047 WP_241625114.1 recombinase RecA Machinery gene
  ACJQW4_RS15080 (ACJQW4_15080) - 3184128..3184727 (+) 600 WP_241625112.1 regulatory protein RecX -
  ACJQW4_RS15090 (ACJQW4_15090) - 3185154..3186032 (+) 879 WP_241625110.1 YbgF trimerization domain-containing protein -
  ACJQW4_RS15095 (ACJQW4_15095) lpxA 3186072..3186860 (-) 789 WP_241625108.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  ACJQW4_RS15100 (ACJQW4_15100) fabZ 3186868..3187344 (-) 477 WP_241625106.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACJQW4_RS15105 (ACJQW4_15105) lpxD 3187352..3188422 (-) 1071 WP_241625104.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  ACJQW4_RS15110 (ACJQW4_15110) - 3188426..3188920 (-) 495 WP_241625102.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37736.19 Da        Isoelectric Point: 4.9318

>NTDB_id=1090419 ACJQW4_RS15075 WP_241625114.1 3183001..3184047(+) (recA) [Acinetobacter sp. A7.4]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIIGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHLEENPQLAQEVER
IIRDQLLTTGNVTVEDKEEEEPDLLLDA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1090419 ACJQW4_RS15075 WP_241625114.1 3183001..3184047(+) (recA) [Acinetobacter sp. A7.4]
ATGGATGAGAATAAAAGCAAGGCACTAAATGCTGCCCTAAGCCAAATTGAAAAACAATTTGGTAAGAATACAGTCATGCG
CCTTGGCGATAATACCGTGCAAGCCGTTGAAGCGGTTTCAACAGGTTCATTAACACTGGATATCGCACTCGGTATTGGTG
GCTTACCTAAAGGTCGTATCGTTGAAATTTACGGTCCTGAATCTTCTGGTAAAACAACCATGACATTACAAGCAATTGCA
CAATGTCAAAAAGCTGGTGGTACTTGTGCCTTCATCGATGCTGAACATGCACTTGATCCACAATATGCACGTAAGCTTGG
CGTCGACATTGACAATCTACTCGTCTCTCAACCAGACAATGGTGAACAAGCACTCGAAATTGCAGACATGCTGGTTCGCT
CTGGTGCAATCGACCTTATCGTTGTCGACTCCGTGGCTGCTCTTACCCCTCGCGCCGAAATCGAAGGTGAAATGGGTGAC
TCACACATGGGCTTACAAGCTCGCCTAATGAGTCAGGCGCTGCGTAAAATTACAGGTAATGCGAAACGTTCGAACTGTAT
GGTAATCTTCATTAACCAAATCCGTATGAAGATTGGTGTAATGTTCGGTAGCCCAGAAACTACCACTGGTGGTAATGCCT
TAAAATTCTATGCGTCAGTACGCTTAGATATTCGTCGTGTTGGTCAAGTGAAAGAAGGCGATGAAATTATTGGTTCAGAA
ACCAAAGTTAAAGTCGTTAAAAACAAAATGGCACCTCCTTTCAAAGAAGCGCTTTTCCAAATTCTTTACGGCAAAGGTGT
GAATCAGTTAGGCGAATTAGTTGACCTTGCGGTACAACAAGACATCGTTCAAAAGGCTGGTGCTTGGTATTCGTATCAAG
GCAACAAAATTGGTCAAGGCAAGAATAATGTAATTCGCCACCTTGAAGAGAATCCACAATTGGCGCAAGAAGTTGAACGT
ATTATCCGTGACCAGTTATTAACAACAGGTAATGTAACCGTAGAGGATAAAGAGGAAGAAGAACCTGATCTACTCCTTGA
TGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

92.837

100

0.931
  recA Acinetobacter baylyi ADP1

92.219

99.713

0.92
  recA Pseudomonas stutzeri DSM 10701

75.684

94.54

0.716
  recA Vibrio cholerae strain A1552

72.289

95.402

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.289

95.402

0.69
  recA Glaesserella parasuis strain SC1401

69.591

98.276

0.684
  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.253

0.658
  recA Neisseria gonorrhoeae MS11

68.21

93.103

0.635
  recA Neisseria gonorrhoeae MS11

68.21

93.103

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.21

93.103

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

98.563

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.115

0.612
  recA Helicobacter pylori strain NCTC11637

63.609

93.966

0.598
  recA Streptococcus pneumoniae Rx1

59.827

99.425

0.595
  recA Streptococcus pneumoniae TIGR4

59.827

99.425

0.595
  recA Streptococcus pneumoniae R6

59.827

99.425

0.595
  recA Streptococcus pneumoniae D39

59.827

99.425

0.595
  recA Helicobacter pylori 26695

63.303

93.966

0.595
  recA Streptococcus mitis NCTC 12261

60.411

97.989

0.592
  recA Streptococcus mitis SK321

60.411

97.989

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.19

93.678

0.592
  recA Streptococcus mutans UA159

62.5

94.253

0.589
  recA Streptococcus pyogenes NZ131

62.769

93.391

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

61.18

92.529

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.241

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.133

92.816

0.549

Multiple sequence alignment