Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLTDJ_RS05810 Genome accession   NZ_CP178394
Coordinates   1226073..1227179 (+) Length   368 a.a.
NCBI ID   WP_016779767.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain S31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1221073..1232179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLTDJ_RS05790 (ACLTDJ_05790) mutS 1221318..1223897 (-) 2580 WP_095003014.1 DNA mismatch repair protein MutS -
  ACLTDJ_RS05795 (ACLTDJ_05795) - 1224086..1224811 (+) 726 WP_095019810.1 XRE family transcriptional regulator -
  ACLTDJ_RS05800 (ACLTDJ_05800) - 1225092..1225436 (+) 345 WP_095003016.1 phage holin family protein -
  ACLTDJ_RS05805 (ACLTDJ_05805) - 1225459..1225989 (+) 531 WP_370824754.1 CinA family protein -
  ACLTDJ_RS05810 (ACLTDJ_05810) recA 1226073..1227179 (+) 1107 WP_016779767.1 recombinase RecA Machinery gene
  ACLTDJ_RS05815 (ACLTDJ_05815) recX 1227188..1227655 (+) 468 WP_413052408.1 recombination regulator RecX -
  ACLTDJ_RS05820 (ACLTDJ_05820) - 1227823..1228938 (-) 1116 WP_095003019.1 TIGR00730 family Rossman fold protein -
  ACLTDJ_RS05825 (ACLTDJ_05825) - 1229146..1229556 (-) 411 WP_095003020.1 PA3611 family quorum-sensing-regulated virulence factor -
  ACLTDJ_RS05830 (ACLTDJ_05830) - 1229764..1230519 (+) 756 WP_413052409.1 tRNA-uridine aminocarboxypropyltransferase -
  ACLTDJ_RS05835 (ACLTDJ_05835) erdR 1230823..1231473 (+) 651 WP_095003022.1 response regulator transcription factor ErdR -
  ACLTDJ_RS05840 (ACLTDJ_05840) - 1231549..1231911 (+) 363 WP_016779774.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39188.98 Da        Isoelectric Point: 5.1798

>NTDB_id=1089452 ACLTDJ_RS05810 WP_016779767.1 1226073..1227179(+) (recA) [Pseudomonas bubulae strain S31]
MDDNKKKALAAALGQIERQFGKGAVMLMGDQERQAVPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIIDSVAALTPKAEIEGDMGD
THVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDVVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKAGAWYSYNGSKIGQGKANSAKFLDDNPDIKDALEK
QLREKLLGPKTDAELAELKVMPKMSKAAKEAAALAEAEEMENATDGDN

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=1089452 ACLTDJ_RS05810 WP_016779767.1 1226073..1227179(+) (recA) [Pseudomonas bubulae strain S31]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTGATGCT
GATGGGCGACCAGGAGCGTCAGGCAGTCCCGGCGATCTCCACCGGCTCCCTGGGTCTGGACATCGCACTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGCCCTGAGTCGTCGGGTAAAACCACACTGACCCTGTCCGTGATTGCC
CAGGCGCAAAAGGCCGGTGCTACCTGCGCCTTCGTCGATGCCGAGCACGCCCTTGATCCTGAGTACGCTGCCAAACTGGG
CGTAAACGTTGATGACCTGCTGGTTTCACAGCCTGACACCGGCGAACAGGCACTGGAAATCACCGATATGCTGGTGCGTT
CCAATGCGGTTGACGTGATCATCATCGACTCCGTTGCTGCACTGACGCCAAAAGCTGAAATCGAAGGCGACATGGGCGAT
ACCCACGTTGGCCTGCAAGCCCGTCTGATGTCGCAAGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGCAGCCCTGAAACCACCACCGGTGGTAACGCAC
TGAAGTTCTACGCTTCGGTACGTCTGGATATCCGCCGCACCGGCGCCGTAAAAGAAGGCGATGTGGTGGTGGGTAGCGAA
ACCCGCGTGAAAGTGGTCAAGAACAAGGTGGCACCACCGTTCCGTCAGGCTGAATTCCAGATCCTGTACGGCAAGGGTAT
CTACCTGAACGGTGAAATGATTGACCTGGGCGTACTGCATGGCTTTGTTGAAAAAGCTGGCGCCTGGTACAGCTACAACG
GCAGCAAAATCGGTCAGGGCAAGGCCAACTCCGCCAAGTTCCTGGACGATAACCCGGACATCAAGGATGCGCTGGAGAAG
CAGCTGCGTGAGAAGTTGCTGGGGCCAAAAACCGATGCCGAACTGGCAGAACTGAAAGTCATGCCAAAAATGAGCAAGGC
TGCCAAAGAAGCTGCAGCGCTGGCTGAAGCCGAAGAAATGGAAAACGCCACCGACGGCGATAACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.073

88.859

0.783
  recA Acinetobacter baylyi ADP1

75.301

90.217

0.679
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.294

91.576

0.671
  recA Vibrio cholerae strain A1552

73.294

91.576

0.671
  recA Acinetobacter baumannii D1279779

73.795

90.217

0.666
  recA Ralstonia pseudosolanacearum GMI1000

68.876

94.293

0.649
  recA Glaesserella parasuis strain SC1401

72.84

88.043

0.641
  recA Neisseria gonorrhoeae MS11

71.296

88.043

0.628
  recA Neisseria gonorrhoeae MS11

71.296

88.043

0.628
  recA Neisseria gonorrhoeae strain FA1090

71.296

88.043

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

88.859

0.571
  recA Helicobacter pylori strain NCTC11637

59.13

93.75

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

89.946

0.552
  recA Helicobacter pylori 26695

58.551

93.75

0.549
  recA Streptococcus pneumoniae Rx1

55.191

99.457

0.549
  recA Streptococcus pneumoniae TIGR4

55.191

99.457

0.549
  recA Streptococcus pneumoniae R6

55.191

99.457

0.549
  recA Streptococcus pneumoniae D39

55.191

99.457

0.549
  recA Streptococcus mutans UA159

60.615

88.315

0.535
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

87.228

0.533
  recA Streptococcus pyogenes NZ131

58.841

89.13

0.524
  recA Streptococcus mitis NCTC 12261

59.443

87.772

0.522
  recA Streptococcus mitis SK321

58.824

87.772

0.516
  recA Latilactobacillus sakei subsp. sakei 23K

57.944

87.228

0.505
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

88.043

0.5
  recA Lactococcus lactis subsp. cremoris KW2

56.656

87.772

0.497

Multiple sequence alignment