Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFCT9_RS02080 Genome accession   NZ_CP178241
Coordinates   442626..443690 (+) Length   354 a.a.
NCBI ID   WP_412520427.1    Uniprot ID   -
Organism   Staphylococcus simulans strain PFJB-50N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 437626..448690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCT9_RS02055 ymfI 438474..439178 (+) 705 WP_412520418.1 elongation factor P 5-aminopentanone reductase -
  ACFCT9_RS02060 - 439311..440150 (+) 840 WP_412520419.1 DUF3388 domain-containing protein -
  ACFCT9_RS02065 - 440172..440570 (+) 399 WP_412520421.1 helix-turn-helix domain-containing protein -
  ACFCT9_RS02070 pgsA 440596..441177 (+) 582 WP_412520423.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFCT9_RS02075 - 441312..442457 (+) 1146 WP_412520425.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ACFCT9_RS02080 recA 442626..443690 (+) 1065 WP_412520427.1 recombinase RecA Machinery gene
  ACFCT9_RS02085 rny 443890..445449 (+) 1560 WP_412520429.1 ribonuclease Y -
  ACFCT9_RS02090 - 445561..446556 (-) 996 WP_412520431.1 YeiH family protein -
  ACFCT9_RS02095 - 446679..447509 (+) 831 WP_412520433.1 LysR family transcriptional regulator -
  ACFCT9_RS02100 - 447622..447840 (-) 219 WP_412520435.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38557.61 Da        Isoelectric Point: 5.3701

>NTDB_id=1088606 ACFCT9_RS02080 WP_412520427.1 442626..443690(+) (recA) [Staphylococcus simulans strain PFJB-50N]
MNNERQKALDTVIKNMEKSFGKGAVMKLGDNKARRVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKQGGIAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNCTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGERMGQGKENVKNYLKEHPDVKADIDQ
KLRQKLGIFDGDVEEKEEKEAEKNNENASLFEEE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1088606 ACFCT9_RS02080 WP_412520427.1 442626..443690(+) (recA) [Staphylococcus simulans strain PFJB-50N]
TTGAATAATGAACGTCAAAAAGCGCTAGATACTGTTATTAAGAATATGGAGAAATCGTTTGGTAAGGGTGCGGTTATGAA
GTTAGGCGATAACAAAGCACGCCGTGTTTCAAGTGTATCAAGCGGTTCTGTTACATTAGATAACGCTTTAGGAGTAGGCG
GATACCCTAAAGGAAGAATTGTAGAAATATATGGACCAGAAAGTTCTGGTAAAACAACAGTTGCATTGCATGCGATTGCG
GAAGTACAAAAACAAGGCGGCATTGCGGCATTTATCGATGCTGAGCATGCGTTAGACCCTGTCTATGCAGAAGCATTAGG
TGTAGATATCAACAACTTATACCTTTCACAACCTGACCACGGGGAACAAGGTTTAGAGATTGCTGAAGCCTTTGTACGTA
GTGGTGCAGTGGACATTATTGTTGTTGACTCAGTTGCAGCATTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCACGTTTGATGTCTCAAGCATTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATTGTAC
AGCGATTTTCATCAACCAAATTCGTGAAAAAGTCGGTGTTATGTTCGGTAACCCTGAAACAACACCAGGTGGACGTGCAT
TGAAGTTCTACAGCTCAGTTCGTTTAGAAGTACGTCGTGCTGAACAATTAAAACAAGGTCAAGAAATCGTCGGTAACCGT
ACTAAAATTAAAGTCGTTAAAAACAAAGTTGCACCTCCATTCAGAGTGGCAGAAGTGGACATTATGTACGGACAAGGTAT
TTCTAAAGAAGGCGAATTAATCGACTTAGGTGTCGAACATGATATCGTAGATAAATCAGGCGCTTGGTATTCTTACAATG
GCGAACGTATGGGTCAAGGTAAAGAAAATGTTAAAAATTACTTGAAAGAGCATCCTGATGTGAAAGCAGACATCGATCAA
AAATTACGTCAAAAATTGGGTATCTTTGATGGCGATGTTGAAGAGAAAGAAGAAAAAGAAGCAGAAAAAAATAATGAAAA
TGCATCATTATTTGAAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

92.09

0.701
  recA Latilactobacillus sakei subsp. sakei 23K

70.845

96.893

0.686
  recA Streptococcus pneumoniae TIGR4

63.788

100

0.647
  recA Streptococcus pneumoniae Rx1

63.788

100

0.647
  recA Streptococcus pneumoniae D39

63.788

100

0.647
  recA Streptococcus pneumoniae R6

63.788

100

0.647
  recA Streptococcus mutans UA159

64.023

99.718

0.638
  recA Streptococcus pyogenes NZ131

67.372

93.503

0.63
  recA Streptococcus mitis SK321

63.714

98.87

0.63
  recA Lactococcus lactis subsp. cremoris KW2

67.069

93.503

0.627
  recA Streptococcus mitis NCTC 12261

63.143

98.87

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

97.175

0.607
  recA Acinetobacter baylyi ADP1

65.644

92.09

0.605
  recA Vibrio cholerae strain A1552

65.337

92.09

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

92.09

0.602
  recA Neisseria gonorrhoeae MS11

64.134

92.938

0.596
  recA Neisseria gonorrhoeae MS11

64.134

92.938

0.596
  recA Neisseria gonorrhoeae strain FA1090

64.134

92.938

0.596
  recA Acinetobacter baumannii D1279779

64.724

92.09

0.596
  recA Ralstonia pseudosolanacearum GMI1000

66.134

88.418

0.585
  recA Helicobacter pylori 26695

62.805

92.655

0.582
  recA Helicobacter pylori strain NCTC11637

62.5

92.655

0.579
  recA Pseudomonas stutzeri DSM 10701

62.27

92.09

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.503

0.571
  recA Glaesserella parasuis strain SC1401

61.61

91.243

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

90.395

0.542

Multiple sequence alignment