Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLKL9_RS07845 Genome accession   NZ_CP178219
Coordinates   1522554..1523687 (-) Length   377 a.a.
NCBI ID   WP_412475847.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain H8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1517554..1528687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKL9_RS07825 - 1518458..1519252 (-) 795 WP_024855101.1 TIGR00282 family metallophosphoesterase -
  ACLKL9_RS07830 rny 1519384..1520943 (-) 1560 WP_011667971.1 ribonuclease Y -
  ACLKL9_RS07835 - 1521271..1521423 (+) 153 WP_021742880.1 hypothetical protein -
  ACLKL9_RS07840 - 1521477..1522400 (-) 924 WP_024855102.1 IS30 family transposase -
  ACLKL9_RS07845 recA 1522554..1523687 (-) 1134 WP_412475847.1 recombinase RecA Machinery gene
  ACLKL9_RS07850 cinA 1523781..1525031 (-) 1251 WP_412475848.1 competence/damage-inducible protein A Machinery gene
  ACLKL9_RS07855 pgsA 1525087..1525674 (-) 588 WP_011668109.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLKL9_RS07860 - 1525736..1526641 (-) 906 WP_024855103.1 helix-turn-helix domain-containing protein -
  ACLKL9_RS07865 yfmH 1526755..1528044 (-) 1290 WP_024855104.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40336.72 Da        Isoelectric Point: 5.3901

>NTDB_id=1088414 ACLKL9_RS07845 WP_412475847.1 1522554..1523687(-) (recA) [Levilactobacillus brevis strain H8]
MADERQAALDKALKKIEKDFGKGSIMRLGDNSNLEVETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTASYIDAENALDPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNR
TRIKVVKNKVAPPFKRAEVDIMYGQGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGRENAKQYLADHPDMMAEVNQ
RVRAAYGVGDEEAAATKATETKTDAPKDKDKGKTKAKDKPADVTPGQIELAPDKSAK

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=1088414 ACLKL9_RS07845 WP_412475847.1 1522554..1523687(-) (recA) [Levilactobacillus brevis strain H8]
ATGGCTGACGAACGACAAGCGGCGCTGGATAAAGCGCTGAAGAAGATTGAAAAAGACTTTGGTAAAGGCTCGATTATGCG
ATTAGGGGACAATAGTAACCTCGAAGTTGAGACCGTACCATCAGGCTCGTTAGCACTTGACGTTGCCTTGGGTGTCGGCG
GTTACCCTCGCGGACGGATTGTAGAAATTTATGGTCCAGAATCTTCTGGGAAGACGACCGTTGCTTTGCACGCAGTTGCC
GAGGTCCAAAAGCGTGGTGGAACAGCCTCCTATATTGATGCTGAAAATGCGTTGGATCCAGCCTATGCAACGGCATTAGG
GGTTAACATTGATGATTTATTGCTGTCGCAGCCAGATACTGGGGAACAAGGTTTGCAAATCGCTGATGCCTTGATTTCCA
GTGGTGCGATTGACATTGTCGTGGTTGATTCCGTGGCAGCCTTAGTGCCACGTGCTGAAATTGAAGGCGAAATGGGTGAT
GCTCACGTGGGTCTGCAAGCCCGATTGATGTCACAAGCCTTACGGAAGCTATCTGGGACTATCAATAAAACGAAGACAAT
CGCGTTATTTATCAATCAGATTCGGGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAGACCACACCAGGTGGCCGGGCAC
TGAAATTCTATGCGACAGTGCGGTTAGAGGTACGACGGGCCGAACAGATTAAAGATGGCACGGATGTTATCGGTAACCGG
ACGCGAATCAAGGTCGTTAAGAACAAGGTTGCGCCGCCATTTAAACGGGCCGAAGTTGATATCATGTACGGGCAAGGAAT
CTCACAAACCGGTGAATTGCTCGACATGGCGGTTGAGAAAGATATCGTTGATAAAAGCGGTTCTTGGTATTCTTATGGTG
AAGACCGAATTGGTCAAGGCCGAGAGAATGCCAAACAGTACTTGGCAGATCATCCAGATATGATGGCCGAAGTTAATCAA
CGTGTCCGGGCTGCTTACGGTGTTGGCGATGAAGAAGCCGCAGCGACTAAAGCAACTGAGACGAAGACGGATGCGCCTAA
AGATAAGGATAAAGGGAAGACAAAGGCTAAAGATAAACCGGCCGATGTTACTCCCGGTCAGATTGAGTTAGCACCAGACA
AATCAGCTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

83.621

92.308

0.772
  recA Bacillus subtilis subsp. subtilis str. 168

75.305

87.003

0.655
  recA Streptococcus pyogenes NZ131

67.688

95.225

0.645
  recA Streptococcus pneumoniae R6

68.661

93.103

0.639
  recA Streptococcus pneumoniae TIGR4

68.661

93.103

0.639
  recA Streptococcus pneumoniae Rx1

68.661

93.103

0.639
  recA Streptococcus pneumoniae D39

68.661

93.103

0.639
  recA Streptococcus mitis SK321

70.262

90.981

0.639
  recA Streptococcus mitis NCTC 12261

69.883

90.716

0.634
  recA Streptococcus mutans UA159

66.667

94.695

0.631
  recA Lactococcus lactis subsp. cremoris KW2

69.643

89.125

0.621
  recA Neisseria gonorrhoeae MS11

59.77

92.308

0.552
  recA Neisseria gonorrhoeae MS11

59.77

92.308

0.552
  recA Neisseria gonorrhoeae strain FA1090

59.77

92.308

0.552
  recA Ralstonia pseudosolanacearum GMI1000

62.614

87.268

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.121

87.533

0.544
  recA Vibrio cholerae strain A1552

62.229

85.676

0.533
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

85.676

0.533
  recA Pseudomonas stutzeri DSM 10701

57.681

91.512

0.528
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.856

86.737

0.528
  recA Acinetobacter baylyi ADP1

61.3

85.676

0.525
  recA Acinetobacter baumannii D1279779

60.372

85.676

0.517
  recA Glaesserella parasuis strain SC1401

59.813

85.146

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.055

87.268

0.507
  recA Helicobacter pylori 26695

56.667

87.533

0.496
  recA Helicobacter pylori strain NCTC11637

56.667

87.533

0.496

Multiple sequence alignment