Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ACK2SD_RS06715 | Genome accession | NZ_CP178183 |
| Coordinates | 1462435..1463502 (+) | Length | 355 a.a. |
| NCBI ID | WP_039579520.1 | Uniprot ID | A0AAI8KDE1 |
| Organism | Pseudomonas sp. SC11 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1434588..1469064 | 1462435..1463502 | within | 0 |
Gene organization within MGE regions
Location: 1434588..1469064
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK2SD_RS06555 (ACK2SD_06555) | - | 1434588..1435484 (-) | 897 | WP_029613439.1 | LysR substrate-binding domain-containing protein | - |
| ACK2SD_RS06560 (ACK2SD_06560) | - | 1435589..1436701 (+) | 1113 | WP_039579556.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| ACK2SD_RS06565 (ACK2SD_06565) | fghA | 1436710..1437555 (+) | 846 | WP_039579554.1 | S-formylglutathione hydrolase | - |
| ACK2SD_RS06570 (ACK2SD_06570) | ispF | 1437785..1438258 (+) | 474 | WP_039579552.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| ACK2SD_RS06575 (ACK2SD_06575) | truD | 1438255..1439313 (+) | 1059 | WP_412461668.1 | tRNA pseudouridine(13) synthase TruD | - |
| ACK2SD_RS06580 (ACK2SD_06580) | surE | 1439301..1440050 (+) | 750 | WP_412461669.1 | 5'/3'-nucleotidase SurE | - |
| ACK2SD_RS06585 (ACK2SD_06585) | - | 1440092..1440730 (+) | 639 | WP_162889596.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| ACK2SD_RS06590 (ACK2SD_06590) | - | 1440930..1441790 (+) | 861 | WP_029613444.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| ACK2SD_RS06595 (ACK2SD_06595) | rpoS | 1441900..1442907 (+) | 1008 | WP_029613445.1 | RNA polymerase sigma factor RpoS | - |
| ACK2SD_RS06600 (ACK2SD_06600) | fdxA | 1443420..1443743 (-) | 324 | WP_029613446.1 | ferredoxin FdxA | - |
| ACK2SD_RS06605 (ACK2SD_06605) | mutS | 1443880..1446450 (-) | 2571 | WP_412461670.1 | DNA mismatch repair protein MutS | - |
| ACK2SD_RS06610 (ACK2SD_06610) | - | 1446573..1447316 (+) | 744 | WP_080754755.1 | helix-turn-helix transcriptional regulator | - |
| ACK2SD_RS06615 (ACK2SD_06615) | - | 1447852..1448175 (+) | 324 | WP_039579545.1 | phage holin family protein | - |
| ACK2SD_RS06620 (ACK2SD_06620) | - | 1448187..1448684 (+) | 498 | WP_029613449.1 | hypothetical protein | - |
| ACK2SD_RS06625 (ACK2SD_06625) | - | 1448681..1449241 (+) | 561 | WP_342650762.1 | phage baseplate assembly protein V | - |
| ACK2SD_RS06630 (ACK2SD_06630) | - | 1449328..1449654 (+) | 327 | WP_412461671.1 | GPW/gp25 family protein | - |
| ACK2SD_RS06635 (ACK2SD_06635) | - | 1449651..1450532 (+) | 882 | WP_412461672.1 | baseplate J/gp47 family protein | - |
| ACK2SD_RS06640 (ACK2SD_06640) | - | 1450534..1451142 (+) | 609 | WP_342650764.1 | phage tail protein I | - |
| ACK2SD_RS06645 (ACK2SD_06645) | - | 1451135..1452871 (+) | 1737 | WP_412461673.1 | phage tail protein | - |
| ACK2SD_RS06650 (ACK2SD_06650) | - | 1452912..1453508 (+) | 597 | WP_412461674.1 | hypothetical protein | - |
| ACK2SD_RS06655 (ACK2SD_06655) | - | 1453642..1454808 (+) | 1167 | WP_039579537.1 | phage tail sheath family protein | - |
| ACK2SD_RS06660 (ACK2SD_06660) | - | 1454822..1455331 (+) | 510 | WP_029613455.1 | phage major tail tube protein | - |
| ACK2SD_RS06665 (ACK2SD_06665) | - | 1455342..1455644 (+) | 303 | WP_342650769.1 | phage tail assembly protein | - |
| ACK2SD_RS06670 (ACK2SD_06670) | - | 1456384..1457976 (+) | 1593 | WP_412461675.1 | hypothetical protein | - |
| ACK2SD_RS06675 (ACK2SD_06675) | - | 1457992..1458837 (+) | 846 | WP_412461676.1 | phage tail protein | - |
| ACK2SD_RS06680 (ACK2SD_06680) | - | 1458812..1459018 (+) | 207 | WP_029613458.1 | tail protein X | - |
| ACK2SD_RS06685 (ACK2SD_06685) | - | 1459053..1460087 (+) | 1035 | WP_412461677.1 | phage late control D family protein | - |
| ACK2SD_RS06690 (ACK2SD_06690) | - | 1460120..1460284 (+) | 165 | Protein_1315 | Com family DNA-binding transcriptional regulator | - |
| ACK2SD_RS06695 (ACK2SD_06695) | - | 1460316..1460672 (+) | 357 | WP_029613460.1 | hypothetical protein | - |
| ACK2SD_RS06700 (ACK2SD_06700) | - | 1460746..1461294 (+) | 549 | WP_412461678.1 | glycoside hydrolase family 19 protein | - |
| ACK2SD_RS06705 (ACK2SD_06705) | - | 1461327..1461788 (+) | 462 | WP_412462276.1 | lysis system i-spanin subunit Rz | - |
| ACK2SD_RS06710 (ACK2SD_06710) | - | 1461847..1462329 (+) | 483 | WP_412461679.1 | CinA family protein | - |
| ACK2SD_RS06715 (ACK2SD_06715) | recA | 1462435..1463502 (+) | 1068 | WP_039579520.1 | recombinase RecA | Machinery gene |
| ACK2SD_RS06720 (ACK2SD_06720) | recX | 1463522..1463989 (+) | 468 | WP_412461680.1 | recombination regulator RecX | - |
| ACK2SD_RS06725 (ACK2SD_06725) | - | 1464101..1465165 (-) | 1065 | WP_412461681.1 | LOG family protein | - |
| ACK2SD_RS06730 (ACK2SD_06730) | - | 1465490..1465912 (-) | 423 | WP_412461682.1 | quorum-sensing-regulated virulence factor family protein | - |
| ACK2SD_RS06735 (ACK2SD_06735) | - | 1466133..1466843 (+) | 711 | WP_412461683.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACK2SD_RS06740 (ACK2SD_06740) | erdR | 1467050..1467700 (+) | 651 | WP_029613468.1 | response regulator transcription factor ErdR | - |
| ACK2SD_RS06745 (ACK2SD_06745) | - | 1467769..1468134 (+) | 366 | WP_412461684.1 | diacylglycerol kinase | - |
| ACK2SD_RS06750 (ACK2SD_06750) | finR | 1468138..1469064 (-) | 927 | WP_029613470.1 | LysR family transcriptional regulator FinR | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37529.82 Da Isoelectric Point: 5.8689
>NTDB_id=1088126 ACK2SD_RS06715 WP_039579520.1 1462435..1463502(+) (recA) [Pseudomonas sp. SC11]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQRSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGAEIEK
QIRDKLLNAGAVAAAGKTAAAQADASDVADADAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQRSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGAEIEK
QIRDKLLNAGAVAAAGKTAAAQADASDVADADAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=1088126 ACK2SD_RS06715 WP_039579520.1 1462435..1463502(+) (recA) [Pseudomonas sp. SC11]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGCCAATTCGGCAAGGGCGCGGTCATGCG
CATGGGGGACCACGAGCGCCAAGCGATTCCCGCCATTTCCACCGGCTCCCTGGGGCTGGACATCGCCCTCGGCATTGGCG
GTCTGCCAAAGGGCCGGATCGTCGAGATCTACGGTCCGGAGTCCTCGGGTAAGACCACACTGACGCTGTCGGTCATTGCC
GAAGCTCAGAGAAGTGGTGCCACCTGCGCCTTCGTCGATGCCGAGCACGCGCTTGATCCCGAGTACGCTGGCAAGCTGGG
CGTTAACGTCGACGATCTGCTGGTCTCCCAGCCAGACACTGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATTATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGTGAGATGGGTGAC
ATGCACGTCGGCCTGCAGGCCCGCTTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
AGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGTAGCCCGGAGACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCCGTACGTCTCGACATCCGCCGCACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGTAGCGAG
ACCCGCGTCAAAGTGGTCAAGAACAAGGTCTCGCCACCGTTCCGTCAGGCCGAGTTCCAGATTCTGTACGGCAAGGGTAT
CTACCGTAATGGTGAGATCATCGACCTGGGCGTTTCTCAAGGCTTGGTCGAAAAATCCGGTGCCTGGTACAGCTACCAAG
GCAACAAGATCGGTCAGGGCAAGGCCAATGCCGCCAAGTACTTGCAGGAAAACCCAGCCATCGGTGCTGAAATCGAGAAG
CAGATTCGCGACAAGCTGCTCAATGCTGGCGCGGTAGCTGCTGCGGGCAAGACTGCAGCAGCCCAGGCAGATGCCAGTGA
CGTAGCCGATGCAGACGCCGGTTACTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGCCAATTCGGCAAGGGCGCGGTCATGCG
CATGGGGGACCACGAGCGCCAAGCGATTCCCGCCATTTCCACCGGCTCCCTGGGGCTGGACATCGCCCTCGGCATTGGCG
GTCTGCCAAAGGGCCGGATCGTCGAGATCTACGGTCCGGAGTCCTCGGGTAAGACCACACTGACGCTGTCGGTCATTGCC
GAAGCTCAGAGAAGTGGTGCCACCTGCGCCTTCGTCGATGCCGAGCACGCGCTTGATCCCGAGTACGCTGGCAAGCTGGG
CGTTAACGTCGACGATCTGCTGGTCTCCCAGCCAGACACTGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATTATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGTGAGATGGGTGAC
ATGCACGTCGGCCTGCAGGCCCGCTTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
AGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGTAGCCCGGAGACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCCGTACGTCTCGACATCCGCCGCACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGTAGCGAG
ACCCGCGTCAAAGTGGTCAAGAACAAGGTCTCGCCACCGTTCCGTCAGGCCGAGTTCCAGATTCTGTACGGCAAGGGTAT
CTACCGTAATGGTGAGATCATCGACCTGGGCGTTTCTCAAGGCTTGGTCGAAAAATCCGGTGCCTGGTACAGCTACCAAG
GCAACAAGATCGGTCAGGGCAAGGCCAATGCCGCCAAGTACTTGCAGGAAAACCCAGCCATCGGTGCTGAAATCGAGAAG
CAGATTCGCGACAAGCTGCTCAATGCTGGCGCGGTAGCTGCTGCGGGCAAGACTGCAGCAGCCCAGGCAGATGCCAGTGA
CGTAGCCGATGCAGACGCCGGTTACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.