Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ACLCD0_RS15125 Genome accession   NZ_CP177228
Coordinates   3043685..3044755 (+) Length   356 a.a.
NCBI ID   WP_067261794.1    Uniprot ID   A0AAX3LKD2
Organism   Sulfitobacter faviae strain P51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3038685..3049755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLCD0_RS15110 (ACLCD0_15110) - 3039299..3040459 (+) 1161 WP_411975073.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACLCD0_RS15115 (ACLCD0_15115) - 3040635..3042869 (+) 2235 WP_411976445.1 ATP-binding protein -
  ACLCD0_RS15120 (ACLCD0_15120) - 3042888..3043481 (-) 594 WP_411976446.1 gamma-glutamyl kinase -
  ACLCD0_RS15125 (ACLCD0_15125) recA 3043685..3044755 (+) 1071 WP_067261794.1 recombinase RecA Machinery gene
  ACLCD0_RS15130 (ACLCD0_15130) alaS 3044891..3047548 (+) 2658 WP_411975074.1 alanine--tRNA ligase -
  ACLCD0_RS15135 (ACLCD0_15135) - 3047554..3047841 (+) 288 WP_093741992.1 DUF1330 domain-containing protein -
  ACLCD0_RS15140 (ACLCD0_15140) - 3047927..3048652 (+) 726 WP_411975075.1 phosphatase PAP2 family protein -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 37924.37 Da        Isoelectric Point: 4.9474

>NTDB_id=1086295 ACLCD0_RS15125 WP_067261794.1 3043685..3044755(+) (recA) [Sulfitobacter faviae strain P51]
MATADLLTMDSKKTAEKQKALDSALAQIERQFGKGSIMKLGAEGAIQDIKASSTGSLGLDIALGIGGLPMGRIIEIYGPE
SSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYAKKLGVDIDELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAA
LTPKSELEGEMGDSNVGVQARLMSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRI
GALKDRDEVVGNATKVKIVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFSYGDERIGQGRENAKNF
LKQNTAMASEIEDKIRAAHGLDFEGSGGDDADILEA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1086295 ACLCD0_RS15125 WP_067261794.1 3043685..3044755(+) (recA) [Sulfitobacter faviae strain P51]
ATGGCAACGGCAGATCTTTTGACGATGGACAGCAAGAAAACCGCAGAAAAGCAAAAGGCGCTTGACAGCGCGCTGGCCCA
GATCGAACGTCAGTTCGGCAAAGGGTCGATCATGAAACTGGGGGCCGAAGGGGCGATCCAGGATATCAAAGCCAGCTCCA
CAGGCTCGCTTGGCCTTGATATTGCGCTTGGCATCGGCGGCTTGCCGATGGGGCGTATCATTGAGATTTATGGCCCGGAA
TCCTCGGGTAAGACAACGCTGACCCTGCATTGCGTGGCAGAGCAGCAGAAAGCAGGGGGCGTTTGCGCCTTTGTCGACGC
GGAACATGCGCTTGATCCGCAATATGCGAAAAAGCTTGGCGTGGACATTGACGAGCTGTTGATCTCCCAGCCCGACACGG
GTGAGCAGGCGCTGGAAATCACCGATACGCTGGTACGTTCTGGCGCGGTCAATATGGTGATCGTCGACTCTGTCGCGGCC
CTGACGCCGAAATCCGAGCTTGAAGGTGAGATGGGCGACAGCAATGTTGGCGTTCAGGCCCGTTTGATGAGCCAAGCAAT
GCGCAAGCTCACCGGGTCGATCAGCCGTTCAAATTGTATGGTTATCTTCATCAACCAAATCCGGATGAAGATCGGCGTGA
TGTTCGGCTCTCCTGAGACCACCACCGGCGGTAACGCGCTGAAATTCTACTCCTCCGTCCGTCTCGACATCCGCCGGATC
GGCGCCCTGAAGGACCGGGACGAGGTCGTTGGCAACGCGACGAAGGTCAAGATCGTCAAGAACAAAGTGGCGCCACCCTT
CAAACAGGTCGAATTCGACATCATGTATGGCGAAGGCATTTCCAAAATGGGGGAGTTGCTGGACCTTGGGGTGAAGGCCG
GTGTGGTCGATAAATCCGGCTCGTGGTTCAGCTATGGGGATGAGCGGATCGGGCAGGGGCGTGAGAACGCAAAGAACTTC
CTGAAACAGAACACTGCCATGGCATCGGAGATCGAAGACAAGATCCGCGCGGCCCACGGGTTGGACTTCGAAGGCTCCGG
CGGTGACGACGCGGATATTCTCGAAGCTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.037

92.135

0.654

  recA Glaesserella parasuis strain SC1401

70.405

90.169

0.635

  recA Pseudomonas stutzeri DSM 10701

69.47

90.169

0.626

  recA Neisseria gonorrhoeae MS11

67.477

92.416

0.624

  recA Neisseria gonorrhoeae MS11

67.477

92.416

0.624

  recA Neisseria gonorrhoeae strain FA1090

67.477

92.416

0.624

  recA Bacillus subtilis subsp. subtilis str. 168

66.767

92.978

0.621

  recA Acinetobacter baumannii D1279779

69.062

89.888

0.621

  recA Vibrio cholerae strain A1552

69.062

89.888

0.621

  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.062

89.888

0.621

  recA Acinetobacter baylyi ADP1

68.438

89.888

0.615

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.776

94.101

0.61

  recA Helicobacter pylori strain NCTC11637

65.455

92.697

0.607

  recA Lactococcus lactis subsp. cremoris KW2

61.143

98.315

0.601

  recA Helicobacter pylori 26695

64.848

92.697

0.601

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

91.573

0.584

  recA Streptococcus pneumoniae R6

61.329

92.978

0.57

  recA Streptococcus mitis SK321

61.329

92.978

0.57

  recA Streptococcus mitis NCTC 12261

61.329

92.978

0.57

  recA Streptococcus pneumoniae TIGR4

61.329

92.978

0.57

  recA Streptococcus pneumoniae Rx1

61.329

92.978

0.57

  recA Streptococcus pneumoniae D39

61.329

92.978

0.57

  recA Latilactobacillus sakei subsp. sakei 23K

61.656

91.573

0.565

  recA Streptococcus mutans UA159

59.697

92.697

0.553

  recA Streptococcus pyogenes NZ131

59.878

92.416

0.553

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

91.011

0.553


Multiple sequence alignment