Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLHWD_RS13260 Genome accession   NZ_CP177121
Coordinates   2733239..2734288 (-) Length   349 a.a.
NCBI ID   WP_126781650.1    Uniprot ID   A0A429ZGA8
Organism   Vagococcus salmoninarum strain 2022-418     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2728239..2739288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLHWD_RS13245 (ACLHWD_13245) - 2729629..2730270 (-) 642 WP_193989627.1 CPBP family intramembrane glutamic endopeptidase -
  ACLHWD_RS13250 (ACLHWD_13250) - 2730287..2730793 (-) 507 WP_193989626.1 LysM peptidoglycan-binding domain-containing protein -
  ACLHWD_RS13255 (ACLHWD_13255) rny 2730889..2732445 (-) 1557 WP_126781652.1 ribonuclease Y -
  ACLHWD_RS13260 (ACLHWD_13260) recA 2733239..2734288 (-) 1050 WP_126781650.1 recombinase RecA Machinery gene
  ACLHWD_RS13265 (ACLHWD_13265) cinA 2734398..2735648 (-) 1251 WP_193989625.1 competence/damage-inducible protein A Machinery gene
  ACLHWD_RS13270 (ACLHWD_13270) pgsA 2735774..2736352 (-) 579 WP_193989678.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLHWD_RS13275 (ACLHWD_13275) - 2736385..2737272 (-) 888 WP_193989624.1 RodZ domain-containing protein -
  ACLHWD_RS13280 (ACLHWD_13280) yfmH 2737434..2738738 (-) 1305 WP_193989623.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37615.04 Da        Isoelectric Point: 5.3603

>NTDB_id=1085417 ACLHWD_RS13260 WP_126781650.1 2733239..2734288(-) (recA) [Vagococcus salmoninarum strain 2022-418]
MADDRKVALDAALKKIEKSFGKGSIMKLGEKIDTQISTVPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQRNGGTAAFIDAEHALDPKYAQNLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATVRLEVRRAEQLKIGTDIIGNR
TKIKVVKNKVAPPFKVAEVDLMYGEGISKAGELIDMASDRDIVDKSGAWYSYKEERIGQGRENAKRYILDHPAMFAEIES
RVRNEFGIGDGSEEVAEPVEVTLDLKDKK

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1085417 ACLHWD_RS13260 WP_126781650.1 2733239..2734288(-) (recA) [Vagococcus salmoninarum strain 2022-418]
GTGGCAGATGATCGTAAAGTAGCCTTAGACGCTGCGTTAAAAAAGATAGAAAAAAGTTTCGGTAAAGGGTCAATTATGAA
GTTAGGGGAAAAGATTGATACGCAAATCTCAACTGTTCCCAGTGGTTCGCTAGCACTAGACGTTGCGCTAGGTGTAGGTG
GCTACCCTCGAGGTCGGATTATTGAAGTTTATGGTCCAGAGAGTTCAGGTAAAACAACTGTTGCCTTACATGCCATCGCT
GAAGTTCAACGAAATGGCGGAACAGCAGCCTTTATTGATGCTGAGCATGCCTTAGATCCAAAATATGCCCAAAACTTAGG
GGTAAACATCGATGAATTATTATTATCACAACCAGATACTGGTGAGCAAGGCCTAGAAATTGCTGATGCTTTAGTTTCAA
GTGGCGCGATTGATATCGTTGTTGTCGATTCAGTAGCAGCCTTAGTTCCCCGTGCGGAAATTGATGGCGAAATGGGTGAT
GCCCACGTTGGCTTACAAGCTCGTTTAATGTCTCAAGCCCTACGTAAATTATCAGGTTCAATCAATAAAACTAAAACGAT
TGCGTTATTCATTAACCAAATTCGTGAAAAAGTCGGCGTCATGTTTGGTAACCCAGAAATTACCCCTGGTGGTCGCGCGT
TGAAGTTCTACGCAACGGTCCGCTTAGAAGTCCGTCGTGCAGAGCAATTAAAAATCGGAACGGATATTATTGGTAACCGT
ACGAAAATTAAAGTTGTTAAAAACAAAGTTGCACCACCATTTAAAGTGGCAGAAGTTGATTTAATGTACGGCGAAGGAAT
TTCAAAAGCCGGCGAACTAATCGATATGGCTTCTGATCGTGACATCGTTGATAAGAGTGGTGCTTGGTACTCTTACAAAG
AAGAACGAATTGGTCAAGGTCGTGAAAATGCGAAACGTTACATCTTAGATCATCCAGCGATGTTTGCTGAAATCGAAAGC
CGTGTTAGAAATGAATTCGGCATTGGTGATGGCAGTGAAGAAGTGGCTGAACCAGTTGAAGTTACCTTAGATTTAAAAGA
TAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429ZGA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.723

95.129

0.768
  recA Bacillus subtilis subsp. subtilis str. 168

79.077

93.123

0.736
  recA Streptococcus mitis SK321

69.444

100

0.716
  recA Streptococcus mitis NCTC 12261

68.975

100

0.713
  recA Streptococcus pneumoniae D39

71.598

96.848

0.693
  recA Streptococcus pneumoniae Rx1

71.598

96.848

0.693
  recA Streptococcus pneumoniae R6

71.598

96.848

0.693
  recA Streptococcus pneumoniae TIGR4

71.598

96.848

0.693
  recA Streptococcus pyogenes NZ131

71.903

94.842

0.682
  recA Streptococcus mutans UA159

66.573

100

0.679
  recA Lactococcus lactis subsp. cremoris KW2

67.066

95.702

0.642
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.727

94.556

0.593
  recA Neisseria gonorrhoeae MS11

61.702

94.269

0.582
  recA Neisseria gonorrhoeae MS11

61.702

94.269

0.582
  recA Neisseria gonorrhoeae strain FA1090

61.702

94.269

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.702

94.269

0.582
  recA Helicobacter pylori 26695

58.601

98.281

0.576
  recA Helicobacter pylori strain NCTC11637

58.601

98.281

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.422

92.264

0.576
  recA Ralstonia pseudosolanacearum GMI1000

61.656

93.41

0.576
  recA Glaesserella parasuis strain SC1401

61.491

92.264

0.567
  recA Acinetobacter baumannii D1279779

60.429

93.41

0.564
  recA Acinetobacter baylyi ADP1

60.429

93.41

0.564
  recA Pseudomonas stutzeri DSM 10701

59.509

93.41

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.752

92.55

0.553
  recA Vibrio cholerae strain A1552

59.752

92.55

0.553

Multiple sequence alignment