Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACKTY1_RS11665 Genome accession   NZ_AP031292
Coordinates   2281575..2282633 (+) Length   352 a.a.
NCBI ID   WP_197257068.1    Uniprot ID   -
Organism   Paenibacillus melissococcoides strain J11TS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2276575..2287633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTY1_RS11640 (PMJ11TS3_23950) - 2277006..2277170 (+) 165 WP_213426579.1 hypothetical protein -
  ACKTY1_RS11645 (PMJ11TS3_23960) - 2277285..2277773 (+) 489 WP_213426580.1 YajQ family cyclic di-GMP-binding protein -
  ACKTY1_RS11650 (PMJ11TS3_23970) rimO 2278043..2279371 (+) 1329 WP_213426581.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACKTY1_RS11655 (PMJ11TS3_23980) pgsA 2279368..2279946 (+) 579 WP_168181034.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACKTY1_RS11660 (PMJ11TS3_23990) - 2280076..2281332 (+) 1257 WP_213426582.1 competence/damage-inducible protein A -
  ACKTY1_RS11665 (PMJ11TS3_24000) recA 2281575..2282633 (+) 1059 WP_197257068.1 recombinase RecA Machinery gene
  ACKTY1_RS11670 (PMJ11TS3_24010) - 2282790..2283452 (+) 663 WP_213426583.1 regulatory protein RecX -
  ACKTY1_RS11675 (PMJ11TS3_24020) rny 2283779..2285326 (+) 1548 WP_213426584.1 ribonuclease Y -
  ACKTY1_RS11680 (PMJ11TS3_24030) - 2285398..2286192 (+) 795 WP_213426585.1 TIGR00282 family metallophosphoesterase -
  ACKTY1_RS11685 (PMJ11TS3_24040) - 2286478..2286738 (+) 261 WP_006286829.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38184.52 Da        Isoelectric Point: 5.0014

>NTDB_id=108508 ACKTY1_RS11665 WP_197257068.1 2281575..2282633(+) (recA) [Paenibacillus melissococcoides strain J11TS3]
MSDRRAALEMALRQIEKQFGKGSIMKLGESNHMQVEIVPSGSLALDIALGIGGLPRGRIIEVYGPESSGKTTVALHAIAE
VQKVGGQAAFIDAEHALDPTYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRRVETIKQGNDMIGNRT
RIKVVKNKVAPPFKQADIDIMYGEGISREGSIVDIGTEMDIIQKSGAWYSYEGERLGQGRENAKQFLKENPEIALTIENK
VREASNLSTVVRNHSEHDAEEAEDALELELES

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=108508 ACKTY1_RS11665 WP_197257068.1 2281575..2282633(+) (recA) [Paenibacillus melissococcoides strain J11TS3]
GTGTCAGATCGCCGCGCTGCATTAGAAATGGCATTGCGCCAAATCGAGAAACAATTCGGTAAAGGTTCGATCATGAAACT
TGGCGAGTCCAACCATATGCAGGTTGAGATTGTGCCGAGCGGATCGTTGGCACTTGATATAGCTCTTGGAATCGGCGGAT
TGCCAAGAGGACGGATTATTGAAGTATACGGACCGGAATCTTCCGGTAAGACGACGGTTGCGCTTCACGCGATTGCTGAA
GTGCAGAAGGTTGGCGGACAAGCTGCGTTCATCGACGCGGAGCACGCGCTCGATCCTACATACGCGAGCAAGCTTGGCGT
CAACATTGACGAGCTGCTTCTGTCCCAGCCGGATACAGGGGAGCAGGCGCTCGAGATTGCCGAAGCGCTTGTGCGCAGCG
GCGCGGTGGACATTATCGTCATCGACTCCGTCGCGGCTCTCGTGCCGAAGGCGGAGATTGAAGGCGAGATGGGAGATTCC
CACGTCGGTTTGCAAGCCCGCCTCATGTCCCAGGCGCTTCGCAAATTGTCCGGAGCGATCAGCAAGTCCAAGACGATCGC
GATCTTCATCAACCAGCTTCGCGAGAAGGTCGGCGTCATGTTCGGGAACCCGGAGACGACGCCGGGCGGCCGCGCATTGA
AGTTCTATTCCACGATCCGGCTGGATGTCCGGCGGGTGGAGACGATCAAGCAGGGCAACGACATGATCGGGAACCGGACA
CGCATCAAGGTCGTGAAGAACAAGGTCGCGCCTCCATTCAAGCAGGCAGACATCGATATTATGTACGGCGAAGGGATTTC
CCGCGAAGGAAGCATCGTAGATATCGGCACGGAGATGGACATTATTCAGAAGAGCGGGGCCTGGTATTCGTACGAGGGCG
AGCGTCTGGGCCAAGGCCGTGAGAATGCGAAGCAGTTCCTGAAGGAAAATCCGGAGATTGCTCTGACGATCGAGAACAAG
GTTCGTGAAGCAAGCAATTTGTCGACGGTGGTCCGGAACCATTCCGAGCATGATGCTGAAGAGGCCGAGGATGCTCTGGA
GCTGGAGCTTGAATCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.875

92.898

0.77
  recA Latilactobacillus sakei subsp. sakei 23K

72.222

97.159

0.702
  recA Streptococcus mutans UA159

65.46

100

0.668
  recA Streptococcus pneumoniae R6

66.282

98.58

0.653
  recA Streptococcus pneumoniae Rx1

66.282

98.58

0.653
  recA Streptococcus pneumoniae D39

66.282

98.58

0.653
  recA Streptococcus pneumoniae TIGR4

66.282

98.58

0.653
  recA Streptococcus pyogenes NZ131

69.444

92.045

0.639
  recA Streptococcus mitis NCTC 12261

68.923

92.33

0.636
  recA Lactococcus lactis subsp. cremoris KW2

67.576

93.75

0.634
  recA Streptococcus mitis SK321

68.615

92.33

0.634
  recA Neisseria gonorrhoeae MS11

62.609

98.011

0.614
  recA Neisseria gonorrhoeae MS11

62.609

98.011

0.614
  recA Neisseria gonorrhoeae strain FA1090

62.609

98.011

0.614
  recA Glaesserella parasuis strain SC1401

62.319

98.011

0.611
  recA Acinetobacter baylyi ADP1

61.318

99.148

0.608
  recA Ralstonia pseudosolanacearum GMI1000

68.932

87.784

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

91.193

0.605
  recA Vibrio cholerae strain A1552

66.355

91.193

0.605
  recA Acinetobacter baumannii D1279779

61.383

98.58

0.605
  recA Pseudomonas stutzeri DSM 10701

60.641

97.443

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.176

96.591

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

92.898

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

91.761

0.562
  recA Helicobacter pylori 26695

60.681

91.761

0.557
  recA Helicobacter pylori strain NCTC11637

60.681

91.761

0.557

Multiple sequence alignment