Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ACLINX_RS19720 | Genome accession | NZ_CP176876 |
| Coordinates | 4348057..4349115 (+) | Length | 352 a.a. |
| NCBI ID | WP_005785454.1 | Uniprot ID | A0A0R3ALL9 |
| Organism | Pseudomonas orientalis strain MPB27 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4330345..4349115 | 4348057..4349115 | within | 0 |
Gene organization within MGE regions
Location: 4330345..4349115
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLINX_RS19590 (ACLINX_19590) | - | 4330345..4331115 (-) | 771 | WP_181284132.1 | sulfite exporter TauE/SafE family protein | - |
| ACLINX_RS19595 (ACLINX_19595) | - | 4331219..4332109 (+) | 891 | WP_411566723.1 | LysR family transcriptional regulator | - |
| ACLINX_RS19600 (ACLINX_19600) | - | 4332188..4332559 (-) | 372 | WP_181284131.1 | hypothetical protein | - |
| ACLINX_RS19605 (ACLINX_19605) | - | 4332552..4333040 (-) | 489 | WP_065951834.1 | Panacea domain-containing protein | - |
| ACLINX_RS19610 (ACLINX_19610) | - | 4333274..4333999 (+) | 726 | WP_181284130.1 | helix-turn-helix transcriptional regulator | - |
| ACLINX_RS19615 (ACLINX_19615) | - | 4334593..4334931 (+) | 339 | WP_124426114.1 | phage holin family protein | - |
| ACLINX_RS19620 (ACLINX_19620) | - | 4334951..4335466 (+) | 516 | WP_191951547.1 | hypothetical protein | - |
| ACLINX_RS19625 (ACLINX_19625) | - | 4335470..4336078 (+) | 609 | WP_181284127.1 | phage baseplate assembly protein V | - |
| ACLINX_RS19630 (ACLINX_19630) | - | 4336091..4336423 (+) | 333 | WP_181284126.1 | phage baseplate protein | - |
| ACLINX_RS19635 (ACLINX_19635) | - | 4336420..4337415 (+) | 996 | WP_191951546.1 | baseplate J/gp47 family protein | - |
| ACLINX_RS19640 (ACLINX_19640) | - | 4337412..4338140 (+) | 729 | WP_181284124.1 | phage tail protein I | - |
| ACLINX_RS19645 (ACLINX_19645) | - | 4338137..4338667 (+) | 531 | WP_181284123.1 | hypothetical protein | - |
| ACLINX_RS19650 (ACLINX_19650) | - | 4338715..4339497 (+) | 783 | WP_181284122.1 | phage tail protein | - |
| ACLINX_RS19655 (ACLINX_19655) | - | 4339500..4339802 (+) | 303 | WP_181284121.1 | hypothetical protein | - |
| ACLINX_RS19660 (ACLINX_19660) | - | 4339890..4340063 (+) | 174 | WP_164484513.1 | hypothetical protein | - |
| ACLINX_RS19665 (ACLINX_19665) | - | 4340066..4341232 (+) | 1167 | WP_181284120.1 | phage tail protein | - |
| ACLINX_RS19670 (ACLINX_19670) | - | 4341232..4341738 (+) | 507 | WP_124357279.1 | phage major tail tube protein | - |
| ACLINX_RS19675 (ACLINX_19675) | - | 4341791..4342372 (+) | 582 | WP_411566348.1 | phage tail assembly protein | - |
| ACLINX_RS19680 (ACLINX_19680) | - | 4342369..4342494 (+) | 126 | WP_258232390.1 | hypothetical protein | - |
| ACLINX_RS19685 (ACLINX_19685) | - | 4342501..4344723 (+) | 2223 | WP_411566349.1 | phage tail tape measure protein | - |
| ACLINX_RS19690 (ACLINX_19690) | - | 4344723..4345106 (+) | 384 | WP_181284117.1 | phage tail protein | - |
| ACLINX_RS19695 (ACLINX_19695) | - | 4345099..4345311 (+) | 213 | WP_124431702.1 | tail protein X | - |
| ACLINX_RS19700 (ACLINX_19700) | - | 4345322..4346323 (+) | 1002 | WP_411566350.1 | phage late control D family protein | - |
| ACLINX_RS19705 (ACLINX_19705) | - | 4346346..4346903 (+) | 558 | WP_411566351.1 | glycoside hydrolase family 19 protein | - |
| ACLINX_RS19710 (ACLINX_19710) | - | 4346891..4347391 (+) | 501 | WP_411566352.1 | lysis system i-spanin subunit Rz | - |
| ACLINX_RS19715 (ACLINX_19715) | - | 4347473..4347973 (+) | 501 | WP_411566353.1 | CinA family protein | - |
| ACLINX_RS19720 (ACLINX_19720) | recA | 4348057..4349115 (+) | 1059 | WP_005785454.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37624.19 Da Isoelectric Point: 5.2997
>NTDB_id=1083506 ACLINX_RS19720 WP_005785454.1 4348057..4349115(+) (recA) [Pseudomonas orientalis strain MPB27]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDEMEEADTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDEMEEADTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=1083506 ACLINX_RS19720 WP_005785454.1 4348057..4349115(+) (recA) [Pseudomonas orientalis strain MPB27]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGATATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGGCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCTCAGAAAATGGGTGCCACGTGCGCGTTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
TGTCAACGTTGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTGGTACCGAAGGCAGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCGC
TGAAGTTCTATGCTTCGGTCCGTCTGGATATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCTTTCCGTCAGGCAGAGTTCCAGATTCTTTATGGCAAAGGCAT
CTACCTGAATGGCGAGATGATCGACCTGGGCGTGCTGCACGGCTTTGTCGAGAAATCTGGTGCCTGGTATGCCTATAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGATATCGCCGCCACGCTTGAGAAG
CAGATTCGCGACAAGCTGCTGACCCCAGCACCGGACGTCAAGGCCGCCGCGAACCGCGAGCCGGTTGACGAAATGGAAGA
AGCCGACACTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGATATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGGCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCTCAGAAAATGGGTGCCACGTGCGCGTTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
TGTCAACGTTGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTGGTACCGAAGGCAGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCGC
TGAAGTTCTATGCTTCGGTCCGTCTGGATATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCTTTCCGTCAGGCAGAGTTCCAGATTCTTTATGGCAAAGGCAT
CTACCTGAATGGCGAGATGATCGACCTGGGCGTGCTGCACGGCTTTGTCGAGAAATCTGGTGCCTGGTATGCCTATAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGATATCGCCGCCACGCTTGAGAAG
CAGATTCGCGACAAGCTGCTGACCCCAGCACCGGACGTCAAGGCCGCCGCGAACCGCGAGCCGGTTGACGAAATGGAAGA
AGCCGACACTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.