Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLH0K_RS06890 Genome accession   NZ_CP176772
Coordinates   1459208..1460263 (+) Length   351 a.a.
NCBI ID   WP_411376059.1    Uniprot ID   -
Organism   Arthrobacter sp. MPF02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1454208..1465263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0K_RS06865 (ACLH0K_06865) pgsA 1456345..1456989 (+) 645 WP_411376056.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACLH0K_RS06870 (ACLH0K_06870) - 1456986..1457465 (+) 480 WP_411376057.1 CinA family protein -
  ACLH0K_RS06875 (ACLH0K_06875) - 1457669..1458109 (+) 441 WP_138136690.1 helix-turn-helix domain-containing protein -
  ACLH0K_RS06880 (ACLH0K_06880) - 1458198..1458731 (-) 534 WP_411376058.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLH0K_RS06885 (ACLH0K_06885) - 1458773..1458997 (+) 225 WP_138136692.1 DUF3046 domain-containing protein -
  ACLH0K_RS06890 (ACLH0K_06890) recA 1459208..1460263 (+) 1056 WP_411376059.1 recombinase RecA Machinery gene
  ACLH0K_RS06895 (ACLH0K_06895) - 1460423..1460893 (+) 471 WP_411376427.1 regulatory protein RecX -
  ACLH0K_RS06900 (ACLH0K_06900) miaB 1460969..1462534 (+) 1566 WP_411376060.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACLH0K_RS06905 (ACLH0K_06905) miaA 1462538..1463434 (+) 897 WP_411376061.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  ACLH0K_RS06910 (ACLH0K_06910) dapF 1463495..1464439 (+) 945 WP_411376062.1 diaminopimelate epimerase -
  ACLH0K_RS06915 (ACLH0K_06915) - 1464420..1465034 (-) 615 WP_411376063.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37325.77 Da        Isoelectric Point: 6.1705

>NTDB_id=1082875 ACLH0K_RS06890 WP_411376059.1 1459208..1460263(+) (recA) [Arthrobacter sp. MPF02]
MAAAPDRAKALEAALAQIDKQFGKGSVMRLGDEVRAPIEVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHA
VANAQRAGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIIVIDSVAALVPRAEIEGDM
GDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVG
NRTKAKIVKNKMAPPFKTAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYDGDQLGQGMENSRRFLRDNPELAAEL
ERLIKEKLGVGVKAAEADTKDSPKLKAVDGF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1082875 ACLH0K_RS06890 WP_411376059.1 1459208..1460263(+) (recA) [Arthrobacter sp. MPF02]
ATGGCGGCAGCCCCGGATCGTGCAAAAGCGCTGGAAGCAGCGCTGGCCCAGATTGACAAGCAGTTCGGCAAGGGCTCGGT
CATGCGCCTGGGCGATGAAGTCCGCGCCCCAATTGAAGTCATCCCCACTGGTTCCATCGCCCTGGATGTTGCCCTGGGAA
TCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTACGGCCCTGAATCCTCCGGTAAGACCACCGTTGCCCTGCACGCC
GTGGCCAATGCCCAGCGGGCCGGCGGCATCGCCGCCTTCATCGACGCCGAACACGCGCTGGACCCGGATTACGCCGCCAA
GCTGGGTGTAGACACCGACGCCCTCCTCGTCTCGCAGCCGGACACCGGTGAGCAGGCACTGGAAATCATGGACATGCTGG
TCGGCTCCGGTTCGCTGGACATCATCGTCATCGACTCCGTGGCAGCCCTGGTGCCGCGCGCGGAAATCGAAGGCGACATG
GGCGACAGCCATGTCGGTCTCCAGGCCCGCCTGATGAGCCAGGCGCTGCGTAAGATCACCGGCCGGCTCAGCCAGACCAA
GACCACCGCCATCTTCATCAACCAGCTCCGCGAAAAGATTGGCGTCTTCTTCGGGTCCCCGGAAACCACCACGGGCGGTA
AGGCCTTGAAGTTCTACGCTTCCGTTCGCATCGACGTCCGCCGGATCCAGACGCTGAAGGAAGGCGCCGATTCCGTGGGG
AACCGGACCAAGGCGAAGATCGTCAAGAACAAGATGGCCCCGCCGTTCAAGACCGCCGAGTTCGACATCATCTACGGTCA
GGGCATTTCCCGCGAGGGCGGCATCATCGATATGGGCGTGGAGCACGGCATCATCAAGAAGTCCGGCTCCTGGTTCACCT
ACGACGGCGACCAGCTCGGCCAGGGCATGGAGAACTCCCGCCGCTTCCTCCGGGACAACCCGGAGCTGGCAGCCGAACTT
GAGCGCCTGATCAAGGAGAAGCTTGGCGTCGGCGTGAAGGCGGCCGAGGCCGACACCAAGGACTCGCCGAAGCTGAAGGC
AGTCGACGGGTTTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

63.609

96.296

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

65.846

92.593

0.61
  recA Acinetobacter baylyi ADP1

61.516

97.721

0.601
  recA Ralstonia pseudosolanacearum GMI1000

67.093

89.174

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

93.732

0.595
  recA Acinetobacter baumannii D1279779

64.396

92.023

0.593
  recA Helicobacter pylori 26695

63.03

94.017

0.593
  recA Helicobacter pylori strain NCTC11637

63.03

94.017

0.593
  recA Streptococcus pneumoniae D39

59.483

99.145

0.59
  recA Streptococcus pneumoniae TIGR4

59.483

99.145

0.59
  recA Streptococcus pneumoniae Rx1

59.483

99.145

0.59
  recA Streptococcus pneumoniae R6

59.483

99.145

0.59
  recA Glaesserella parasuis strain SC1401

60.234

97.436

0.587
  recA Streptococcus mitis SK321

58.857

99.715

0.587
  recA Neisseria gonorrhoeae MS11

62.048

94.587

0.587
  recA Neisseria gonorrhoeae MS11

62.048

94.587

0.587
  recA Neisseria gonorrhoeae strain FA1090

62.048

94.587

0.587
  recA Streptococcus mutans UA159

59.195

99.145

0.587
  recA Streptococcus mitis NCTC 12261

58.286

99.715

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.158

92.023

0.581
  recA Vibrio cholerae strain A1552

63.158

92.023

0.581
  recA Streptococcus pyogenes NZ131

62.195

93.447

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.27

92.877

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

61.89

93.447

0.578
  recA Lactococcus lactis subsp. cremoris KW2

59.574

93.732

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.321

90.598

0.556

Multiple sequence alignment