Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACLH0J_RS27745 Genome accession   NZ_CP176771
Coordinates   6098981..6100039 (-) Length   352 a.a.
NCBI ID   WP_003172169.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 6098981..6113398 6098981..6100039 within 0


Gene organization within MGE regions


Location: 6098981..6113398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0J_RS27745 (ACLH0J_27745) recA 6098981..6100039 (-) 1059 WP_003172169.1 recombinase RecA Machinery gene
  ACLH0J_RS27750 (ACLH0J_27750) - 6100123..6100623 (-) 501 WP_411389943.1 CinA family protein -
  ACLH0J_RS27755 (ACLH0J_27755) - 6100766..6101323 (-) 558 WP_411389944.1 glycoside hydrolase family 19 protein -
  ACLH0J_RS27760 (ACLH0J_27760) - 6101347..6102357 (-) 1011 WP_411389945.1 phage late control D family protein -
  ACLH0J_RS27765 (ACLH0J_27765) - 6102367..6102579 (-) 213 WP_411389946.1 tail protein X -
  ACLH0J_RS27770 (ACLH0J_27770) - 6102572..6102955 (-) 384 WP_411389947.1 phage tail protein -
  ACLH0J_RS27775 (ACLH0J_27775) - 6102955..6104031 (-) 1077 WP_411389948.1 hypothetical protein -
  ACLH0J_RS27780 (ACLH0J_27780) - 6104038..6104163 (-) 126 WP_010212704.1 hypothetical protein -
  ACLH0J_RS27785 (ACLH0J_27785) - 6104160..6104732 (-) 573 WP_411389949.1 phage tail assembly protein -
  ACLH0J_RS27790 (ACLH0J_27790) - 6104783..6105289 (-) 507 WP_411389950.1 phage major tail tube protein -
  ACLH0J_RS27795 (ACLH0J_27795) - 6105289..6106455 (-) 1167 WP_411389951.1 phage tail protein -
  ACLH0J_RS27800 (ACLH0J_27800) - 6106458..6106649 (-) 192 WP_078833459.1 hypothetical protein -
  ACLH0J_RS27805 (ACLH0J_27805) - 6106742..6107167 (-) 426 WP_411389952.1 phage tail assembly chaperone -
  ACLH0J_RS27810 (ACLH0J_27810) - 6107179..6108609 (-) 1431 WP_411389953.1 phage tail protein -
  ACLH0J_RS27815 (ACLH0J_27815) - 6108610..6109239 (-) 630 WP_411389954.1 phage tail protein I -
  ACLH0J_RS27820 (ACLH0J_27820) - 6109236..6110231 (-) 996 WP_411389955.1 baseplate J/gp47 family protein -
  ACLH0J_RS27825 (ACLH0J_27825) - 6110228..6110560 (-) 333 WP_321142776.1 phage baseplate protein -
  ACLH0J_RS27830 (ACLH0J_27830) - 6110570..6111181 (-) 612 WP_411389956.1 phage baseplate assembly protein V -
  ACLH0J_RS27835 (ACLH0J_27835) - 6111185..6111700 (-) 516 WP_411389957.1 hypothetical protein -
  ACLH0J_RS27840 (ACLH0J_27840) - 6111722..6112066 (-) 345 WP_411389958.1 phage holin family protein -
  ACLH0J_RS27845 (ACLH0J_27845) - 6112664..6113398 (-) 735 WP_411389959.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37636.18 Da        Isoelectric Point: 5.3036

>NTDB_id=1082868 ACLH0J_RS27745 WP_003172169.1 6098981..6100039(-) (recA) [Pseudomonas sp. MPB23]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKATANREPVEEVEEADTDI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1082868 ACLH0J_RS27745 WP_003172169.1 6098981..6100039(-) (recA) [Pseudomonas sp. MPB23]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAAGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACGCTGTCGGTGATTGCC
CAAGCGCAAAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCGGACACTGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGTGCGGTGAAGGAAGGTGACGAGGTGGTGGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCCGAATTCCAGATTCTTTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTATTGCACGGTTTTGTCGAGAAATCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGATATCGCTGCCACGCTTGAGAAG
CAGATTCGCGACAAGCTGCTGACTCCGGCACCTGACGTGAAAGCTACCGCCAACCGTGAGCCGGTTGAAGAAGTGGAAGA
AGCCGACACTGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.784

100

0.878
  recA Acinetobacter baylyi ADP1

74.709

97.727

0.73
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.076

93.466

0.702
  recA Vibrio cholerae strain A1552

75.076

93.466

0.702
  recA Glaesserella parasuis strain SC1401

69.318

100

0.693
  recA Ralstonia pseudosolanacearum GMI1000

68.067

100

0.69
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.943

100

0.599
  recA Helicobacter pylori 26695

59.375

100

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

60

92.33

0.554
  recA Streptococcus mitis SK321

54.83

100

0.548
  recA Streptococcus pyogenes NZ131

58.232

93.182

0.543
  recA Streptococcus pneumoniae TIGR4

58.589

92.614

0.543
  recA Streptococcus pneumoniae R6

58.589

92.614

0.543
  recA Streptococcus pneumoniae Rx1

58.589

92.614

0.543
  recA Streptococcus pneumoniae D39

58.589

92.614

0.543
  recA Streptococcus mitis NCTC 12261

58.824

91.761

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

91.193

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

92.045

0.523

Multiple sequence alignment