Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACK2JM_RS18890 Genome accession   NZ_CP176638
Coordinates   4312355..4313521 (+) Length   388 a.a.
NCBI ID   WP_115622994.1    Uniprot ID   -
Organism   Blautia coccoides strain SFAD21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4307355..4318521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2JM_RS18870 - 4308534..4309301 (+) 768 WP_029468509.1 ABC transporter ATP-binding protein -
  ACK2JM_RS18875 - 4309291..4311291 (+) 2001 WP_018596497.1 ABC transporter permease -
  ACK2JM_RS18880 - 4311381..4311566 (+) 186 WP_018596496.1 hypothetical protein -
  ACK2JM_RS18885 - 4311580..4311837 (+) 258 WP_018596495.1 spore coat protein -
  ACK2JM_RS18890 recA 4312355..4313521 (+) 1167 WP_115622994.1 recombinase RecA Machinery gene
  ACK2JM_RS18895 - 4313521..4314132 (+) 612 WP_115622993.1 regulatory protein RecX -
  ACK2JM_RS18900 rny 4314261..4315820 (+) 1560 WP_044953616.1 ribonuclease Y -
  ACK2JM_RS18905 - 4316013..4316582 (+) 570 WP_018596491.1 stage II sporulation protein M -
  ACK2JM_RS18910 xerD 4316861..4317745 (+) 885 WP_018596490.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 41729.69 Da        Isoelectric Point: 5.8304

>NTDB_id=1081814 ACK2JM_RS18890 WP_115622994.1 4312355..4313521(+) (recA) [Blautia coccoides strain SFAD21]
MVKEDKLKALDAALGQIEKQFGKGSVMKLGDSSVHMNVETVPTGSLSLDIALGLGGIPKGRIVEVYGPESSGKTTVALHM
VAEVQKRGGIAGFIDAEHALDPAYARNIGVDVDNLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPRAEIEGDM
GDAHVGLQARLMSQALRKLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRIEALKQGGEIVG
NRTRIKVVKNKIAPPFKEAEFDIMFGQGISKAGDILDLAASLGIINKSGAWYAYKDGKIGQGRENAKQYLNENPEIADEV
EAKVREHYGLLEGKTEEESSKDIKEKKADDKAAAAKASDAKAQDMKAPEMKAAEIPGAQRAKKENEEV

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=1081814 ACK2JM_RS18890 WP_115622994.1 4312355..4313521(+) (recA) [Blautia coccoides strain SFAD21]
ATGGTCAAAGAAGATAAATTGAAAGCCCTGGACGCGGCTCTGGGACAGATCGAGAAGCAGTTTGGAAAAGGTTCTGTTAT
GAAACTGGGCGATTCCTCCGTACATATGAATGTGGAGACTGTGCCGACAGGTTCTCTGAGTCTTGATATAGCGTTAGGCT
TGGGCGGAATTCCCAAGGGAAGGATCGTAGAGGTTTATGGACCGGAATCCAGTGGTAAGACCACCGTGGCACTGCACATG
GTGGCTGAAGTACAGAAGAGAGGTGGAATTGCCGGTTTTATTGATGCAGAGCATGCCCTGGATCCTGCGTATGCCAGAAA
TATCGGCGTGGATGTAGACAACCTCTATATTTCACAGCCGGATAATGGAGAACAGGCCCTGGAGATCACAGAGACGATGG
TGCGTTCCGGTGCCGTGGACATTGTGATTGTGGACTCTGTTGCTGCTCTGGTACCAAGAGCTGAGATAGAGGGGGATATG
GGCGATGCCCATGTAGGCCTGCAGGCACGTCTTATGTCCCAGGCGCTCCGTAAGCTGACGGCTGTTATCAGTAAATCCAA
CTGTATTGTTATCTTTATCAATCAGCTCCGTGAGAAAGTCGGCGTAATGTTCGGTAATCCGGAGACCACTACAGGCGGAC
GTGCCCTGAAATTCTATTCCTCCATCCGTTTGGATGTCAGAAGGATCGAGGCTCTGAAGCAGGGCGGTGAGATCGTGGGC
AACCGTACCAGGATCAAAGTGGTTAAGAATAAGATCGCACCTCCTTTTAAGGAGGCTGAATTTGATATTATGTTCGGTCA
GGGAATCTCAAAAGCAGGAGATATTCTGGATCTGGCTGCCAGTCTGGGAATCATAAATAAGAGCGGTGCCTGGTATGCCT
ATAAGGATGGAAAGATTGGCCAGGGACGTGAGAATGCAAAGCAGTATTTAAATGAAAACCCGGAAATAGCAGATGAAGTG
GAAGCAAAAGTCCGGGAACATTACGGACTTCTGGAGGGAAAGACGGAAGAAGAGAGCAGTAAAGATATAAAAGAAAAAAA
AGCTGATGACAAAGCCGCTGCAGCAAAAGCTTCTGATGCGAAAGCCCAGGATATGAAAGCACCGGAAATGAAGGCAGCAG
AGATACCTGGCGCCCAGCGTGCAAAAAAAGAAAATGAGGAAGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.939

84.021

0.588
  recA Streptococcus mutans UA159

64.407

91.237

0.588
  recA Streptococcus pneumoniae D39

65.23

89.691

0.585
  recA Streptococcus pneumoniae Rx1

65.23

89.691

0.585
  recA Streptococcus pneumoniae R6

65.23

89.691

0.585
  recA Streptococcus pneumoniae TIGR4

65.23

89.691

0.585
  recA Streptococcus mitis NCTC 12261

66.077

87.371

0.577
  recA Streptococcus mitis SK321

65.487

87.371

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

66.667

85.052

0.567
  recA Acinetobacter baylyi ADP1

62.428

89.175

0.557
  recA Glaesserella parasuis strain SC1401

66.46

82.99

0.552
  recA Pseudomonas stutzeri DSM 10701

66.149

82.99

0.549
  recA Neisseria gonorrhoeae MS11

64.438

84.794

0.546
  recA Neisseria gonorrhoeae strain FA1090

64.438

84.794

0.546
  recA Neisseria gonorrhoeae MS11

64.438

84.794

0.546
  recA Acinetobacter baumannii D1279779

65.432

83.505

0.546
  recA Vibrio cholerae strain A1552

65.325

83.247

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.325

83.247

0.544
  recA Streptococcus pyogenes NZ131

63.636

85.052

0.541
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

84.536

0.541
  recA Lactococcus lactis subsp. cremoris KW2

63.526

84.794

0.539
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.11

84.536

0.534
  recA Helicobacter pylori strain NCTC11637

62.918

84.794

0.534
  recA Helicobacter pylori 26695

62.614

84.794

0.531
  recA Ralstonia pseudosolanacearum GMI1000

65.287

80.928

0.528
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.112

82.99

0.515

Multiple sequence alignment